Gene detail

Detailed information of ENSFVQP00000019426.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Callogorgia gracilis · all data for this species · gene families

Sequence

CDS

ENSFVQT00000021978

atGAATATGGAAAGATTTCATTTGCTGCTAAGCTGTGCTTTGGTACTGCTAGTCCTTTATTATCCACCGTATGTTAGTGCTCAAGATGAAACTTGCAGGGACCCCATTACTTGTGGTGGATGTATTCGACATTCCCCAGAATGTACTTGGTGTAATCAAAAGAATTATATGTTACGAGGAACAGAACTTCAAAGATGTGATACATTAGCCAACCATAAACTGAAAAACTGCACCAGTATTTCAAATCCGATGTCTGAATTTGTGCCAACAGAGAATGAAGATTTAACAAATACTAGAAAAGTAAAACCTCAAGTGGTGACACTTTCCCTAAGACCAGgtAAAAAAGTAGAATTTAACATCTCTGTTAAGACACCCAAAAATTATCCAGTTGATCTGTACATGTTGATGGACATGTCATTTTCTATGAAAGATAATTTACAATCAGTTGAAACACTTGGGAAAGAGCTTGCACTTAGAATGAAAACGATAACTTCAAGATTTCGTGTTGGATTTGGTACTATGGTAGACAAACCTGTATCGCCATTTATGGAGCCAAATCCTGAACATTTTACTACTCCAGTGAAAGTGGACGGCAGGTACATTTCATCTCCTTGGGTATTCCGGAATGCTCTTTCATTGACCACAGATACAGATCAGTTTGAGAGTATTGTGAGATCCCAAAATCTGTCCGAAAGTATTGATGGTCCAGATGGATGGCTTGATACATTGATGCAAGTAGCAGTTTGCGAACAAGCTGTAGGCTGGTCACCAAAGAACAAGGCCCGACGACTGGTTGTAATTTCAACAGAAGATCAATTTCACATTGCTGGAGATGGATTGTTAGGAGGCATTGTTACACCAAATGATGGTCGTTGTAAATTACAGAATAGCGATACATACTTGGGCACGAATATGGATTACCCTTCCTTGCCACATCTTCGTCAGGTTTTGGCAAAGAGCAGAATTGTCCCAGTCTTTGCCGTGGCTCCAGGTTCAATTGAACTATATAAGAAAGTTGCTGAATATTTTGGTGCAGAAATAGGAGCGGTTGCTGATGAACTAGCTGATAACTCTACAAACATTGTTTCACTGATACGTGATATATACGAAAAAATAGGAGGGACTCAGACCGTATTTCATAATGAAGGTGACGTTCCAGAAATCCAAGTGGATTACACAACGCAATGTTTATACAGAGAGTCGGGTCAAACATGCAAAAATGTTACTGTTGGAGAGACGGTGACATTTACAGTTTCTCTGACGTTGATAAAATGTCCAGCTGATGGAAAGAAATCTTCTCAGTTTGATATAACAACAGCCCTTGGCGATAAGATACCCATCACAGTGAAATATATTTGTGATTGCGATTGTGCGAACAAAACGgaACACAACTCTTCAGAATGCAGTGGACAAGGAACCTTTGAGTGCGGTGATTGCTCATGTAATGAAGGATTCAAGGGGGAAAATTGTGATTGTGCTGAGgctaatgaaaacaaaaacatggaCGCCTGTAAAGCACCAAATGAAAATGAGGTTTGTGGTGGTAGGGGAAGCTGTGAGTGTGGTAAATGCAATTGTGATAAAAGCAAGACATCAAATGAGCGTGTAGATGGCAAGTTCTGTCAGTGCAGCAACCTTCTTTGTAGTAAAGATTCAAAAGGGGAAACATGTGGAGgtCCAACGCGTGGTGAATGTGGTTGTAATAAGTGTATATGTAAAGCTGGATGGACTGGACCGTCTTGTAGTTGTTCTAATAGTACTAGCAATTGTTATGGGGGAAAAGATTCGGTTATGTGCTCTGGCCGAGGCAAATGTCAATGCGATCAGTGTGTTTGCAATAGTCAGTATGCTGGAGCGTTGTGCGACACGTGTGATGGGTGTGAAAAAGGATGTTCATATTTCAAGGACTGTGTCCGCTGCAAAATTTATCAAACTGGGCCACTTGTTGATACTTGTAATAGCAGGTGCAATGCGTCGATTAAAAGCGTTGATAATGTGGAGTCATACGAAGATCAGGGCGTGACCTGTGTTGAAATCGACGATGAAGACGATTGCACGTATGCTTTTGTGCTTAAAGAGAAAGACGAAAAGGTCGAGATTTTTGCAGAAGAGGAAAAACGATGCCCAAGAGAAGAGGGATATTTACTCATTATCATCGGTGTCATTCTTGGTATTGTTGCTATTGGTGCCGCTCTACTCTTGATCTGGAAACTTTTGGCAACTATTCAGGATCGTCGAGAATTTGCGAAATTTGAACGCGAGCAGCAAAATGCACGATGGGATACTAGTGAGAATCCGATATTTAAACAAGCCACGACAACATTCCAAAACCCAACTTTTGGTGGAAAAGGCTGA

Transcript

ENSFVQT00000021978

CGAGCTATGCCGCTGACTGCAACTGAGCCGCCCTTCCGATCAAGTGTGTCTGGCATTTTTGGGTTGTGGTCGTTGCAACTAGCGTGACAGTTATCTGTGCTTTCTCCTGTTTGTTTATTCGAAGAAATTTATCATCGATAAACACTAATAAATCATCATACGTTGTTGGATATCCTTTCCCTGGGATTTTTAACAGCTTTTCATTGTTTTCGTCTTTGTGGAAGATCTGTAACAGTGTTGACGGGCAGCTGTGCTAgctgtttgtgttttttgtgtGACAGgtatattaacaaatataaatGAATATGGAAAGATTTCATTTGCTGCTAAGCTGTGCTTTGGTACTGCTAGTCCTTTATTATCCACCGTATGTTAGTGCTCAAGATGAAACTTGCAGGGACCCCATTACTTGTGGTGGATGTATTCGACATTCCCCAGAATGTACTTGGTGTAATCAAAAGAATTATATGTTACGAGGAACAGAACTTCAAAGATGTGATACATTAGCCAACCATAAACTGAAAAACTGCACCAGTATTTCAAATCCGATGTCTGAATTTGTGCCAACAGAGAATGAAGATTTAACAAATACTAGAAAAGTAAAACCTCAAGTGGTGACACTTTCCCTAAGACCAGgtAAAAAAGTAGAATTTAACATCTCTGTTAAGACACCCAAAAATTATCCAGTTGATCTGTACATGTTGATGGACATGTCATTTTCTATGAAAGATAATTTACAATCAGTTGAAACACTTGGGAAAGAGCTTGCACTTAGAATGAAAACGATAACTTCAAGATTTCGTGTTGGATTTGGTACTATGGTAGACAAACCTGTATCGCCATTTATGGAGCCAAATCCTGAACATTTTACTACTCCAGTGAAAGTGGACGGCAGGTACATTTCATCTCCTTGGGTATTCCGGAATGCTCTTTCATTGACCACAGATACAGATCAGTTTGAGAGTATTGTGAGATCCCAAAATCTGTCCGAAAGTATTGATGGTCCAGATGGATGGCTTGATACATTGATGCAAGTAGCAGTTTGCGAACAAGCTGTAGGCTGGTCACCAAAGAACAAGGCCCGACGACTGGTTGTAATTTCAACAGAAGATCAATTTCACATTGCTGGAGATGGATTGTTAGGAGGCATTGTTACACCAAATGATGGTCGTTGTAAATTACAGAATAGCGATACATACTTGGGCACGAATATGGATTACCCTTCCTTGCCACATCTTCGTCAGGTTTTGGCAAAGAGCAGAATTGTCCCAGTCTTTGCCGTGGCTCCAGGTTCAATTGAACTATATAAGAAAGTTGCTGAATATTTTGGTGCAGAAATAGGAGCGGTTGCTGATGAACTAGCTGATAACTCTACAAACATTGTTTCACTGATACGTGATATATACGAAAAAATAGGAGGGACTCAGACCGTATTTCATAATGAAGGTGACGTTCCAGAAATCCAAGTGGATTACACAACGCAATGTTTATACAGAGAGTCGGGTCAAACATGCAAAAATGTTACTGTTGGAGAGACGGTGACATTTACAGTTTCTCTGACGTTGATAAAATGTCCAGCTGATGGAAAGAAATCTTCTCAGTTTGATATAACAACAGCCCTTGGCGATAAGATACCCATCACAGTGAAATATATTTGTGATTGCGATTGTGCGAACAAAACGgaACACAACTCTTCAGAATGCAGTGGACAAGGAACCTTTGAGTGCGGTGATTGCTCATGTAATGAAGGATTCAAGGGGGAAAATTGTGATTGTGCTGAGgctaatgaaaacaaaaacatggaCGCCTGTAAAGCACCAAATGAAAATGAGGTTTGTGGTGGTAGGGGAAGCTGTGAGTGTGGTAAATGCAATTGTGATAAAAGCAAGACATCAAATGAGCGTGTAGATGGCAAGTTCTGTCAGTGCAGCAACCTTCTTTGTAGTAAAGATTCAAAAGGGGAAACATGTGGAGgtCCAACGCGTGGTGAATGTGGTTGTAATAAGTGTATATGTAAAGCTGGATGGACTGGACCGTCTTGTAGTTGTTCTAATAGTACTAGCAATTGTTATGGGGGAAAAGATTCGGTTATGTGCTCTGGCCGAGGCAAATGTCAATGCGATCAGTGTGTTTGCAATAGTCAGTATGCTGGAGCGTTGTGCGACACGTGTGATGGGTGTGAAAAAGGATGTTCATATTTCAAGGACTGTGTCCGCTGCAAAATTTATCAAACTGGGCCACTTGTTGATACTTGTAATAGCAGGTGCAATGCGTCGATTAAAAGCGTTGATAATGTGGAGTCATACGAAGATCAGGGCGTGACCTGTGTTGAAATCGACGATGAAGACGATTGCACGTATGCTTTTGTGCTTAAAGAGAAAGACGAAAAGGTCGAGATTTTTGCAGAAGAGGAAAAACGATGCCCAAGAGAAGAGGGATATTTACTCATTATCATCGGTGTCATTCTTGGTATTGTTGCTATTGGTGCCGCTCTACTCTTGATCTGGAAACTTTTGGCAACTATTCAGGATCGTCGAGAATTTGCGAAATTTGAACGCGAGCAGCAAAATGCACGATGGGATACTAGTGAGAATCCGATATTTAAACAAGCCACGACAACATTCCAAAACCCAACTTTTGGTGGAAAAGGCTGAATGTGTAGTGTTAtaggttttaaaaaataatagaatTTAATGGATGTTAAACATGAGGTTGTTTTTAGTTTTATCAAGGATCTGATAACACCTAagacatttttcttcaatCTGGTTGCGAAAAGCTTATGGAACTTAGAAGTGTGTGATAGTCTTCTAACGAgattttcttgtttgttttttctttgttctaggttaaattttttacatttttcattttgtttttagtattttacaaCTTTTGTAGTAGTGTACAATCGAGCAAATTAGCGAAGCATTAAAATCTTTGTTGAAATGTTTCTTATATATCGgattaaaaatatgaagaagTGTATGCAGATGTTGATTCGTGTGATGTCTAAACGACGTTTACCGACTCGATAATTATCAAACTCaaatgaaattaatatttaattagtatttagagaaatcggaggaagattacagccaaattttgcaaaCTTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18372 all species →	I-EGF_1	Integrin beta epidermal growth factor like domain 1	Domain	Interproscan
PF08725 all species →	Integrin_b_cyt	Integrin beta cytoplasmic domain	Domain	Interproscan
PF00362 all species →	Integrin_beta	Integrin beta chain VWA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014836 all species →	Domain	Integrin beta subunit, cytoplasmic domain	Interproscan
IPR015812 all species →	Family	Integrin beta subunit	Interproscan
IPR002369 all species →	Domain	Integrin beta subunit, VWA domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR032695 all species →	Homologous_superfamily	Integrin domain superfamily	Interproscan
IPR040622 all species →	Domain	Integrin beta, epidermal growth factor-like domain 1	Interproscan
IPR036349 all species →	Homologous_superfamily	Integrin beta tail domain superfamily	Interproscan
IPR012896 all species →	Domain	Integrin beta subunit, tail	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10082 all species →	INTEGRIN BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0008305 all species →	Cellular Component	integrin complex	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0033627 all species →	Biological Process	cell adhesion mediated by integrin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSFVQP00000019426.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.