Gene detail

Detailed information of ENSFVQP00000022823.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Callogorgia gracilis · all data for this species · gene families

Sequence

CDS

ENSFVQT00000025590

ATGATCATGACCTCAGTATCTGGTCATTTAAAGGAATTGGAGTTTGCGTCAAATTATAAAAAGTGGAACAGCTGCCTGCCTTCAGCATTATTTCGTGCACCAGTAACCAAAGATGTACGGCAAGATGCGAAAAATATCGAATCAACATTGAAGAGAGAGGTCGCCAAATGCAACGCCATTGTAATTTGGACTGACTGTGACAGAGAAGGGGAAAATATTGGTTTCCAAATCATCGAGgtTTGTCTACAAATCAAACCCAGGATTGATGTATATAGAGCTAAGTTTTCTGAAATAACACATAATTCAATAATGAGAGCCTGCTCTAATTTGGCAAGACCAGATCAGCTAACATCATTTGCTGTCGATGTCAGAATGGAGTTGGACCTTCGTATCGGTGCTGCCTTCACTAGATTCCAGACACTTAggcttcaaaaacgttttccacAAGTTCTAAGTGACCAGTTAATCAGCTATGGAAGTTGCCAGTTCCCTACACTTGGTTTTGTAGTTCAACGATACTGCGAAATCCGTAATTTTATAGCTGAAACTTTTTTCAAGATCAAAGTTGTACATGTCACTTCAGAAGGAGAAGTTGAATTTGCATGGACAAGAATCAGAGTTTTCGATCAACTTGCTTGCACAGTGCTGCATCAAGTCTGTCTAGAGAATCCTTGGGCGACTGTGGTTAACCAATCCTCCAAACCAAAGAGCAAGTGGAGACCGTTGCCATTGGATACAGTTGAGCTAGAGAAGCTTGCTTCCAGGAAGTTAAAGATAACTGCAAAAGAAGCAATGAAAATAGCAGAGAAATTGTATAACAGTGGTTATATAAGCTACCCTCGCACAGAAACCAACATCTTCCCTTCTTCAATGAATCTGAATGATCTGATTCAGCTGCAAACATGTGATCAAAACTGGGGAGAATTTGCAGCAAATCTATTGGTCGATGGGGCCCATCCACGCCAAGGCACCAAAACTGACAATGCACATCCTCCAATCCACCCAACGAAGCATACAAGTAATTTAGATGGAAATGAAAAGAGGTTGTACGAGCTCATTGTACGTCATTTCCTAGCTTGCTGCTCCAAGGATGCTCAAGGTATAGAGACTGTGGTAGAGATTGACATTGCTGGAGAGGGATTTTCTGTGAAAGGTCTAGTGATAACTGCCAAGAATTATCTCGATGTTTATCCCTATGACAAATGGTCAGATAAAACCTTGCCTGTTTACCACACAGGAGATACCTTTTTGCCCACATCCATTGATATGGAGGAGAGTGAGACCCAACCACCATCTTTGTTAACAGAAGCTGACCTTATTGGATTAATGGAGAAACATGGCATTGGTACAGATGCTACCCATGCTGAGCACATTGAAACCATAAAGAACAGAACTTATGTTGGTGTGCAGCCAGATGGAACCTTTGTGCCTAGTGAACTGGGGATGGGATTAGTTGAAGGTTATGATACCATGGGCCTGGAGATGTCCAAACCACACTTAAGAGCTGAATTAGAATCagatttgaagaaaatatgcTTGGGTCAAAAAGACAAAGACATTGTTTTGGGAGAACAGATCCAAAAGTACCAAGACATTTTTGTCCAAACTTATGATCATGCCATTCAACTAGACGAAGCTCTAGCCCATTATTTTGGTCAGCCAGAAGAGCTTAACGAAGATCCCATAGCAGCTCAAGTTGTTTACTCTAATCCAGTATTTTCTTGTCCTCTTTGCAAATCTCACTCTTTCTGCATCAGGaaaagaagagaagagaagttTATGATGGGTTGTACAAATTACCCTCAATGCACTGCAAGTGCTTTCTTTCCATCTTTTGTGCTGAATGCCCAAGTGTCAAGAAGAATATGTTCATCATGTGTACCACAACCTGTACATAAAatcaaatttcaattcaagAGAGGTTCAGTTCCTCCTATGATAGATTTAGATTACACTGGATGTGTAAAATGTGAAGAAATGCTTCGAGGTATCCTGGACTTTCAAATACGTTCTATTGGTTCTAGTGGTACAGTTGTTGGCAATCAAAGGGAAGCATCACACCCAAACCGACAAGCCCCTTCCAGAAATTCAAATACTCACCATCTTCCCCATGATTCAGGATATTCATCTTTTCCTCCAAATGAAGCAACACAGGATTCTGCAAATCCTGTTGTCTGCAGCTGTGGTACAGCTGCCACAAAAATGACTGTAAGAAAACAAGGCTTGAACACAGGCCGTCAATTTTTCACATGCCCCAACAAAGCTTGTAATTTCTTTTTGTGGGCTGATGGGACAGGCCACACCTCTACAAGCAGTGCTCAAACATCTGGTTCTGCAGCAAATTCAAACAGCAGAAAAAGAACATTCACAGATTCTAACAGAAATCAACAAGTGTGTTGTAATTGCAGGCTACCAGCAGTGATACAAACAGTGAAGAAAGCTGGCCCTAATCAAGGTAAACAGTTTTACTGTTGTGGCAAACATCAAGGACAGTcatgtaatttttttgaatgggTAAATTCTGCAAGacctcaaaattcaaatattgcACCAAATGGTGAAGCGCCAATCAGGAGAGCACAAAGGTGTTGCAGTATATGTCGGCAACCAGGCCACACAAGAAACAAATGTccaagaaaatga

Transcript

ENSFVQT00000025590

GGGAAgtcaaaatttaacaaaatctaTGAATTCCCTTACAATCTTTTAAATCGGCAGTGCGAAATGATCATGACCTCAGTATCTGGTCATTTAAAGGAATTGGAGTTTGCGTCAAATTATAAAAAGTGGAACAGCTGCCTGCCTTCAGCATTATTTCGTGCACCAGTAACCAAAGATGTACGGCAAGATGCGAAAAATATCGAATCAACATTGAAGAGAGAGGTCGCCAAATGCAACGCCATTGTAATTTGGACTGACTGTGACAGAGAAGGGGAAAATATTGGTTTCCAAATCATCGAGgtTTGTCTACAAATCAAACCCAGGATTGATGTATATAGAGCTAAGTTTTCTGAAATAACACATAATTCAATAATGAGAGCCTGCTCTAATTTGGCAAGACCAGATCAGCTAACATCATTTGCTGTCGATGTCAGAATGGAGTTGGACCTTCGTATCGGTGCTGCCTTCACTAGATTCCAGACACTTAggcttcaaaaacgttttccacAAGTTCTAAGTGACCAGTTAATCAGCTATGGAAGTTGCCAGTTCCCTACACTTGGTTTTGTAGTTCAACGATACTGCGAAATCCGTAATTTTATAGCTGAAACTTTTTTCAAGATCAAAGTTGTACATGTCACTTCAGAAGGAGAAGTTGAATTTGCATGGACAAGAATCAGAGTTTTCGATCAACTTGCTTGCACAGTGCTGCATCAAGTCTGTCTAGAGAATCCTTGGGCGACTGTGGTTAACCAATCCTCCAAACCAAAGAGCAAGTGGAGACCGTTGCCATTGGATACAGTTGAGCTAGAGAAGCTTGCTTCCAGGAAGTTAAAGATAACTGCAAAAGAAGCAATGAAAATAGCAGAGAAATTGTATAACAGTGGTTATATAAGCTACCCTCGCACAGAAACCAACATCTTCCCTTCTTCAATGAATCTGAATGATCTGATTCAGCTGCAAACATGTGATCAAAACTGGGGAGAATTTGCAGCAAATCTATTGGTCGATGGGGCCCATCCACGCCAAGGCACCAAAACTGACAATGCACATCCTCCAATCCACCCAACGAAGCATACAAGTAATTTAGATGGAAATGAAAAGAGGTTGTACGAGCTCATTGTACGTCATTTCCTAGCTTGCTGCTCCAAGGATGCTCAAGGTATAGAGACTGTGGTAGAGATTGACATTGCTGGAGAGGGATTTTCTGTGAAAGGTCTAGTGATAACTGCCAAGAATTATCTCGATGTTTATCCCTATGACAAATGGTCAGATAAAACCTTGCCTGTTTACCACACAGGAGATACCTTTTTGCCCACATCCATTGATATGGAGGAGAGTGAGACCCAACCACCATCTTTGTTAACAGAAGCTGACCTTATTGGATTAATGGAGAAACATGGCATTGGTACAGATGCTACCCATGCTGAGCACATTGAAACCATAAAGAACAGAACTTATGTTGGTGTGCAGCCAGATGGAACCTTTGTGCCTAGTGAACTGGGGATGGGATTAGTTGAAGGTTATGATACCATGGGCCTGGAGATGTCCAAACCACACTTAAGAGCTGAATTAGAATCagatttgaagaaaatatgcTTGGGTCAAAAAGACAAAGACATTGTTTTGGGAGAACAGATCCAAAAGTACCAAGACATTTTTGTCCAAACTTATGATCATGCCATTCAACTAGACGAAGCTCTAGCCCATTATTTTGGTCAGCCAGAAGAGCTTAACGAAGATCCCATAGCAGCTCAAGTTGTTTACTCTAATCCAGTATTTTCTTGTCCTCTTTGCAAATCTCACTCTTTCTGCATCAGGaaaagaagagaagagaagttTATGATGGGTTGTACAAATTACCCTCAATGCACTGCAAGTGCTTTCTTTCCATCTTTTGTGCTGAATGCCCAAGTGTCAAGAAGAATATGTTCATCATGTGTACCACAACCTGTACATAAAatcaaatttcaattcaagAGAGGTTCAGTTCCTCCTATGATAGATTTAGATTACACTGGATGTGTAAAATGTGAAGAAATGCTTCGAGGTATCCTGGACTTTCAAATACGTTCTATTGGTTCTAGTGGTACAGTTGTTGGCAATCAAAGGGAAGCATCACACCCAAACCGACAAGCCCCTTCCAGAAATTCAAATACTCACCATCTTCCCCATGATTCAGGATATTCATCTTTTCCTCCAAATGAAGCAACACAGGATTCTGCAAATCCTGTTGTCTGCAGCTGTGGTACAGCTGCCACAAAAATGACTGTAAGAAAACAAGGCTTGAACACAGGCCGTCAATTTTTCACATGCCCCAACAAAGCTTGTAATTTCTTTTTGTGGGCTGATGGGACAGGCCACACCTCTACAAGCAGTGCTCAAACATCTGGTTCTGCAGCAAATTCAAACAGCAGAAAAAGAACATTCACAGATTCTAACAGAAATCAACAAGTGTGTTGTAATTGCAGGCTACCAGCAGTGATACAAACAGTGAAGAAAGCTGGCCCTAATCAAGGTAAACAGTTTTACTGTTGTGGCAAACATCAAGGACAGTcatgtaatttttttgaatgggTAAATTCTGCAAGacctcaaaattcaaatattgcACCAAATGGTGAAGCGCCAATCAGGAGAGCACAAAGGTGTTGCAGTATATGTCGGCAACCAGGCCACACAAGAAACAAATGTccaagaaaatgaactttcCTCATATTCAACACAGTGTCAGTGATATCGTACTCAGGCATGAAGTGACAACAAAGGACTAAATTAAGAATGAAGACCTTGGGTTTTCTGCAAATCCTGTTGTCTGCAGCTGTGGTACAGCTGCCACAAAAATGACTGTAATAAAACAAGGCTAATGAACACAGGCTGTCAATTTTTCACATGGGCTAATGAGACAGGCCACACCACTACATGCAGTGCTCGAACATCTGGTTCTGCAGCAAATTCAAACAGCAGAAAAAGAACATTCACAGATTCGAACAGAAATCAACACGTGTGTTGTAATTGCAGACAACCAGCAGTGATACAAACAGTGAAAAAAGCTGGCCCTGATCAAGGTAAACAGTTTTACTGTTGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01751 all species →	Toprim	Toprim domain	Family	Interproscan
PF06839 all species →	zf-GRF	GRF zinc finger	Domain	Interproscan
PF01131 all species →	Topoisom_bac	DNA topoisomerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013825 all species →	Homologous_superfamily	DNA topoisomerase, type IA, central region, subdomain 2	Interproscan
IPR006171 all species →	Domain	TOPRIM domain	Interproscan
IPR023405 all species →	Homologous_superfamily	DNA topoisomerase, type IA, core domain	Interproscan
IPR013497 all species →	Domain	DNA topoisomerase, type IA, central	Interproscan
IPR003601 all species →	Domain	DNA topoisomerase, type IA, domain 2	Interproscan
IPR010666 all species →	Domain	Zinc finger, GRF-type	Interproscan
IPR013824 all species →	Homologous_superfamily	DNA topoisomerase, type IA, central region, subdomain 1	Interproscan
IPR003602 all species →	Domain	DNA topoisomerase, type IA, DNA-binding domain	Interproscan
IPR000380 all species →	Family	DNA topoisomerase, type IA	Interproscan
IPR034144 all species →	Domain	DNA topoisomerase 3-like, TOPRIM domain	Interproscan
IPR013826 all species →	Homologous_superfamily	DNA topoisomerase, type IA, central region, subdomain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11390 all species →	PROKARYOTIC DNA TOPOISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003916 all species →	Molecular Function	DNA topoisomerase activity	Interproscan
GO:0006265 all species →	Biological Process	DNA topological change	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003917 all species →	Molecular Function	DNA topoisomerase type I (single strand cut, ATP-independent) activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03165	TOP3; DNA topoisomerase III	EC:5.6.2.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.