Gene detail

Detailed information of ENSFVQP00000023091.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation CGRAC1 · all data for this species · gene families

Sequence

CDS

ENSFVQT00000025901

ATGCATGTGCATCAAAGGAAGATAGGCATCCCTACATGCAGTCAAATATATAAactttttgttattatttataaggTTATTATGAGTGCTATATGGTGTAGTGGAAAACTTGGTACTGCATACTATGAAACAGGATCAGCTCAAATTTCTATGCAAATGGACATCTTGGAAACACAAGATTTTCAGTTCCTAAAACGATGTAAACAAGTTAAACCCACTTCAATTGtaacaagttcaaatcaagATGAGAGATTTCTGAAAATACTTCAAGGACAAGGTGACTCATTAGAGATCTGTAAAAGAAGAATTTTGGCTTTAAATGGATTACCTGGAATCCCGCAGCATTACACTGATACAGAGAGAATGGTATACCTCGGTTCAATTGTCCCGTTTGAAAATGTAaacatgGTTAAGGCAACTGGGGCGTTaataaaatatcttgaaaaaaaGAGGGTTGGTGTGGAACTGGAAGACTCTGATACAAGAGTTCCTATTCTTGCCCTGAAGACATACTCATTAGAGGATTCAATGATCATTGACGAAAATACCTACAGTGCTTtacagatatttcaaaaagaatCACACCCATCAGTTTATAAAGTTGGTTCAGGGACTAAAGAAGGTCTATCTCTTTTTGGTATGATGAATTTAACTAAATCCGTTATTGGCAATCGTTTGTTGAGAGTATGGTTTCTTCGTCCAACAACGAACATACAAGTTTTGAAAGAAAGGCAGAAAGCtattgcattttttcactctCCGCGCAATCTGGAAGTTGTCTTGTCTATCcaggacagtttaaaacacatgaAATGCATATCAGTGATTTTGTTAAAGATGGCATCAGCTCAAGCCTCGACAAATGACTGGCAATCATTATACAAGGTATTACGTCATCAGCAGAAAGTTTTAGATTCACGACGGCAACATAACGGGATGGTAAGAGAACGTGCAAATGGCGTGCTCTGCTCATGCCACTCACTTTTTGGCAACATAAACGTCAGCGTTGATTTTGACGATTCCGTTGCCCAGGACAGATTTGTGGTTAAACCTGGAGTGGATGAAACCCTTGATGAAAaaaaaCGAACGTACAATGGTTTGCCTGATTTCATGACAAAAGTTGCTCAAGAGGAACTCAGCAGATTAGACGCATCAATAACAGAatgcaatattttatatttaccaCAGCTTGGATATCTTTTAGCCATTCCAAGAAcagaagaaatgaaagaagaaaaagactTTGAAATGGAGGGATTGCAATTTGTTtttttttccGACAATACTGTGCACTACAAAAGTGCAAGCACCAGAGATCACGAAACTGCTATAATGCACAGATTACAAAGTATTATCTTGGAACACACTAACGTTCTAATGAAAGTTATGGAATATACAGCTGAGTTAGACTGTTTAATTGCCCTGTCTGTTCATGCTAAAGAATACAATTACGTTTGTCCCGAGTTGACAGAAGAAAATATACTTAACATTAAGGGAGGCAGGCATCCGTTACAAGAAATGTACGTAACACCTTTCGTAGCCAATGACACCTTGGTTGAAAAAGAGACATTGCGAATGAAAATCCTCACTGGACCAAATGCCAGTGGTAAAAGTGTTTATTTAAAGCAgGTTGGTTTAATAGTATATCTAGCTCATATCGGGAGTTACGTTCCTGCTGAATCAGCAACAATTGGTATCACCGACAGGATATTTACGAGAATTCATACTCAAGAAACAGTGTCTGTAGGACTGTCAACATttatgattgatttaaatcagATGGCTAATGCTGTTCAATTTGCCAATGCGAGATCTCTAATAATAATCGATGAATTTGGAAAAGGCACAGCCACGGTTGATGGATTATCCTTGTTAACAGCATGTTTAAAGCGTTGGCTATCAGAAGGAAATCGTTGTCCTAAAGTATTGGTATCGACCCATTTTCACAGCATAATCCAACAAAAGCTACTTCCTCTAACTCCTCTTTTAAGTTTTCAGaCGATGGAGACAATGCAAAATGGTGCTGAATTAGTTTTTTTGTACCAGTTAATCGACGGCTATACCAATACTAGTTATGCTTGTCACATTGCTAGTTTGGCTGGAATCTCGAGTGATTTAGTGAAACGTGGAAATGAGGTTTGTTATATGCAGTCAGCTACCGTATTTTCTCTATTAACCCCCCTCCCTTGTAGGTCAACAAAACCTATCAGTCAACAAAACCTTTCAGTCAACAAAACCTTTCAGTCAACAAAACCTTTCAGTCAACAAAACCATTCAGTCAACAAAACCTTTCAGTCAACAAAACCACTCAGTCAACAAAACCGTTCAGTCAACAAAACCGTTCAGTCAACAAAACCATTCAGTCAACACAACCTTTCAGTCAACAAAACCATTCAGTCAACAAAACCATTCAGTCAACAAAACCTATCAGTCAACAAAACCTTTCAGTCAACAAAACCTTTCAGTCAACAAAACCATTCAGTCAACAAAACCATTCAGTCAACAAAACCTTTCAGTCAACAAAACCATTCAGTCAACAAAACCGTTCAGTCAACAAAACCATTCAGTCAACAAAACCATTCAGTCAACAAAACCGTTCAGTCGTTCAGTCAACAAAACCGTTCAGTCGACAAAACCATTCAGTCAACAAAACCGTTCATTGTTTTGAACTTGTATTAA

Transcript

ENSFVQT00000025901

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05190 all species →	MutS_IV	MutS family domain IV	Domain	Interproscan
PF05192 all species →	MutS_III	MutS domain III	Domain	Interproscan
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR007861 all species →	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007696 all species →	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR011184 all species →	Family	DNA mismatch repair Msh2-type	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051026 all species →	Biological Process	chiasma assembly	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08741	MSH5; DNA mismatch repair protein MSH5	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.