Gene detail

Detailed information of ENSFVQP00000025440.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Callogorgia gracilis · all data for this species · gene families

Sequence

CDS

ENSFVQT00000028543

ATGGCGTCCAAGGACGACCATGtgaaagatataaaagaaagTGGATTAAGTTCAACAACGCTTTTCGTCAGAAACTTACCTTTTGCGATCGACAGTAAGGAGCTAGAGAACGTCTTTAGTGACGTTGGTCCGGTGAAGAGATGTTTTGTTGTCAAGGACAAGGAAAATCCCAGCAAGTGCCGTGGATTTGGTTACGTTACGTTTGCTGTAAAAGAAGATGCGGCCAGGGCAAAAGAACGTATAAAATCTATACAGGGCAGGAAGGTGTTCTTGACATTTTCTAATAAAAAGCCAAGGCACAAACAAAGGGGTCAAGTGGAAGTGAAAAAAAGTGATGAAAATGGTGATTACATTGATATGGAAACAATTACAGAGGAAATACCACCAATGCCACCTTCAGGGAAGCCTTTGCAAAGTATCCAAAAGTCAAAACATAAACCCAAATCAGAACGAAGTGCCGCCAGCAATGATGATGGACGTACGATTGTATTGTCGGGATTTCCTGCCACCGCCAATGTGAAGCAACTGAAGAAAGCTTGCAGAAGGATTGGCGAAGTCGAACAGTTTATCTATCCTATGGAAAATTACGGAAACCCGACTGCCCACGCTGTGTTCAAGTCTCATAAACTCACCAGGATAGCTGTTAGGAAACTTGATGGGAAAACTGTGAAAGGTTCAGTCCTAAGTGCTGTCCTTTGCTCtaaggaaaacaaaaagaatgggTCTGTTAAATCACTGAAGAAGAGTCGCCTGATTGTGCGAAATTTGCCATTCAGATGTAGCAAAGAAATGCTGGTGGGTGAGTTCTCAAAATTTGGGGAAATCTCGGAAGTTGTCCTGCCTGCCAAGACAATgggaaacaaaaagaaaaaacttggTTTTGCTTTTGTACAATTCAAGACGGTGTTTGACGCAGCAAAAGCGTTAGAGGCTATGAATCAGAAGGAGATTAAAGGTAGACCCATTGCGGTCGACTGGACATTGCCAAAGAAGAAATATGAATTGCTCAAAGTTAGCGAAGATGTCGAAAAAGGTGAGAATGATCAACAGAACACCAGCGATGAAAGTGAAAACGAGTCTGAGAAGATAGCTGATGCTTCAGAAGAACATGATTCCGTAGGGGAGGAGGGATCTGCAAATGAACAGGAAACCGATGACGATCATGCCGATGAGTCGGGGGAAGAAGGAAGCATCAGTGATGATGAGGATGAAAGTAACAAACATCGAACAAAGAAGAGAAAACTTCGAGATGCTCGGGAGGGCAAAACTGTTTTTATTCGTAATTTGCCATTTGACGCCAGCGAAGAAGAAATTTGTGCTCTGTTTGAGGAGTTTGGTAAAATAGAGTATTGTAAGATTGTTGTTGATCGTGTTGCAGAGCACAGTAGGGGAAGTGCTTTTgtgaaatttgaagaaaagcAAAGTGCAGAGGAATGCCTAAACAAGTGCAACAtggatgatgacgatgatgAAATATCCCTAAGAAGCAGACCGCTGTTTGTCAGTCTGGCAGTGACCAAGGGAAAAGTTCCACAGCTCCTAGCAGAGAAGGATTCCGCCAAGAGATCCCCTCGTGATAAAAGGAATTTGTATCTGGCGAAAGAAGGCGTCATCGTGCCGGGGTCCCAAGTGGCAGATGGCTTGTCCAAAGCAGATCTTCAAAAAAGGCAGAAAGCGGAAGCAGAGAAGAAAGCCAAACTCAGAATGCCACACTTCGTAGTTTCAAAGACAAGGCTTTGTTTACGTAATCTGCCTTTGAGTGTTGACAACAAAAAATTAGCCGAGGTCCTGGGGACCGTTTGCGATGGGAAGCCAAAAAAAGTTGGAAAAGTAAATATCATGAGGAGCAATGAAAGAGTTGACAGCTCCGGTACTGGAAGGTCAAAGGGTTTCGGATTTGCAGAGTTCTCAACACACGAAGACGCATTGGGGGTTTTGAGAGCAATGAATAACAACCCAGAGGTATTTGGCCCAGATCGAAGACCCATCGTCGAGTTTGCCATCGAGAACAGTCTAATATTAAAACGCCAGGAGCAACGAAAGGTGAAAAACCAACAGAAATGGGAAGGGTTAAAAGGTCAGCAGGATAGTGAGCCAACTAAAAGAGAGTTGGGCAATAAGaaaggagaaaaaagaaaacggGACAGCCAGGGACATGCCAAAAGACCTGGTAAAAGAAAAGAACCTCAAGAAAGTCAAGGACTTGCAGATGGTTTTGGTAAAAAGATAAAACATCCCAGAAAAAGACAAGAAACGGGCAAAACAGTTGATGCTAATGCTTCCCAGGAACTGAATCATAAGTCTAAGAATAGAAAAACATTTGATTCAGAGATTAAGGCCAAGGCTCAGAAGGTTCATTCTTTGAATAGCAGTAGTGCACAGCCACCCCCTAATAAAGACATATCTTCAAGATCTAAACATAAGCAGAAGGAGAAAGCCAACAAGGAAGAAGATAACTTTAACAAAATTGTGCAGAAGTATAAGAGTAAACTTTTCGGAGATAACACAAAGCAGTTGCAAGCTTCGCGGTGGTTTCAGTGA

Transcript

ENSFVQT00000028543

TTTTGGTTAGGGAAATAGTTAGTATTCGTgatgaaatttgttgataaaatgacgtcttgtcagtttggcagttagaAGCAAGTGCAAGTTACTACTAGTTACCACGACTTCAAATCTCGCGAAGCCACGCGGTCATCATGGCGTCCAAGGACGACCATGtgaaagatataaaagaaagTGGATTAAGTTCAACAACGCTTTTCGTCAGAAACTTACCTTTTGCGATCGACAGTAAGGAGCTAGAGAACGTCTTTAGTGACGTTGGTCCGGTGAAGAGATGTTTTGTTGTCAAGGACAAGGAAAATCCCAGCAAGTGCCGTGGATTTGGTTACGTTACGTTTGCTGTAAAAGAAGATGCGGCCAGGGCAAAAGAACGTATAAAATCTATACAGGGCAGGAAGGTGTTCTTGACATTTTCTAATAAAAAGCCAAGGCACAAACAAAGGGGTCAAGTGGAAGTGAAAAAAAGTGATGAAAATGGTGATTACATTGATATGGAAACAATTACAGAGGAAATACCACCAATGCCACCTTCAGGGAAGCCTTTGCAAAGTATCCAAAAGTCAAAACATAAACCCAAATCAGAACGAAGTGCCGCCAGCAATGATGATGGACGTACGATTGTATTGTCGGGATTTCCTGCCACCGCCAATGTGAAGCAACTGAAGAAAGCTTGCAGAAGGATTGGCGAAGTCGAACAGTTTATCTATCCTATGGAAAATTACGGAAACCCGACTGCCCACGCTGTGTTCAAGTCTCATAAACTCACCAGGATAGCTGTTAGGAAACTTGATGGGAAAACTGTGAAAGGTTCAGTCCTAAGTGCTGTCCTTTGCTCtaaggaaaacaaaaagaatgggTCTGTTAAATCACTGAAGAAGAGTCGCCTGATTGTGCGAAATTTGCCATTCAGATGTAGCAAAGAAATGCTGGTGGGTGAGTTCTCAAAATTTGGGGAAATCTCGGAAGTTGTCCTGCCTGCCAAGACAATgggaaacaaaaagaaaaaacttggTTTTGCTTTTGTACAATTCAAGACGGTGTTTGACGCAGCAAAAGCGTTAGAGGCTATGAATCAGAAGGAGATTAAAGGTAGACCCATTGCGGTCGACTGGACATTGCCAAAGAAGAAATATGAATTGCTCAAAGTTAGCGAAGATGTCGAAAAAGGTGAGAATGATCAACAGAACACCAGCGATGAAAGTGAAAACGAGTCTGAGAAGATAGCTGATGCTTCAGAAGAACATGATTCCGTAGGGGAGGAGGGATCTGCAAATGAACAGGAAACCGATGACGATCATGCCGATGAGTCGGGGGAAGAAGGAAGCATCAGTGATGATGAGGATGAAAGTAACAAACATCGAACAAAGAAGAGAAAACTTCGAGATGCTCGGGAGGGCAAAACTGTTTTTATTCGTAATTTGCCATTTGACGCCAGCGAAGAAGAAATTTGTGCTCTGTTTGAGGAGTTTGGTAAAATAGAGTATTGTAAGATTGTTGTTGATCGTGTTGCAGAGCACAGTAGGGGAAGTGCTTTTgtgaaatttgaagaaaagcAAAGTGCAGAGGAATGCCTAAACAAGTGCAACAtggatgatgacgatgatgAAATATCCCTAAGAAGCAGACCGCTGTTTGTCAGTCTGGCAGTGACCAAGGGAAAAGTTCCACAGCTCCTAGCAGAGAAGGATTCCGCCAAGAGATCCCCTCGTGATAAAAGGAATTTGTATCTGGCGAAAGAAGGCGTCATCGTGCCGGGGTCCCAAGTGGCAGATGGCTTGTCCAAAGCAGATCTTCAAAAAAGGCAGAAAGCGGAAGCAGAGAAGAAAGCCAAACTCAGAATGCCACACTTCGTAGTTTCAAAGACAAGGCTTTGTTTACGTAATCTGCCTTTGAGTGTTGACAACAAAAAATTAGCCGAGGTCCTGGGGACCGTTTGCGATGGGAAGCCAAAAAAAGTTGGAAAAGTAAATATCATGAGGAGCAATGAAAGAGTTGACAGCTCCGGTACTGGAAGGTCAAAGGGTTTCGGATTTGCAGAGTTCTCAACACACGAAGACGCATTGGGGGTTTTGAGAGCAATGAATAACAACCCAGAGGTATTTGGCCCAGATCGAAGACCCATCGTCGAGTTTGCCATCGAGAACAGTCTAATATTAAAACGCCAGGAGCAACGAAAGGTGAAAAACCAACAGAAATGGGAAGGGTTAAAAGGTCAGCAGGATAGTGAGCCAACTAAAAGAGAGTTGGGCAATAAGaaaggagaaaaaagaaaacggGACAGCCAGGGACATGCCAAAAGACCTGGTAAAAGAAAAGAACCTCAAGAAAGTCAAGGACTTGCAGATGGTTTTGGTAAAAAGATAAAACATCCCAGAAAAAGACAAGAAACGGGCAAAACAGTTGATGCTAATGCTTCCCAGGAACTGAATCATAAGTCTAAGAATAGAAAAACATTTGATTCAGAGATTAAGGCCAAGGCTCAGAAGGTTCATTCTTTGAATAGCAGTAGTGCACAGCCACCCCCTAATAAAGACATATCTTCAAGATCTAAACATAAGCAGAAGGAGAAAGCCAACAAGGAAGAAGATAACTTTAACAAAATTGTGCAGAAGTATAAGAGTAAACTTTTCGGAGATAACACAAAGCAGTTGCAAGCTTCGCGGTGGTTTCAGTGAAACTGTTGTGAGCATGGGAAAAGATGtttaatgttttgaaataaaaaaagatacAAAATACAGTAAAACTGTTGCATTGTTATCTTTATAAAGTATTAGCTTCCTACTGACATGCACTGATGTACACTACCCTTAGTGAATAAATGTCTGGTTTggttaaattttaaagtgaAAGTTGCTGACTTGTACAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR051945 all species →	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039 all species →	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14573	NOP4, RBM28; nucleolar protein 4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.