Gene detail

Detailed information of ENSFVQP00000026899.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Callogorgia gracilis · all data for this species · gene families

Sequence

CDS

Transcript

ENSFVQT00000030146

TTTCAGTCGTACACTGGTTTTcctattattatttttctcagAAATCAAGCTGTTAAATTATCAAAGATTGCCAGATATCTAATGTCTTATGTGATCATGTTTATCCTGGTGATTGGTgaataaatgttctttttttatatttgaatttattaaatttgttttgatacAAAATGGATGGAAAAAGAAAACGGGAAGTGGATGAAGAGGATGAAGAGGATGATGAGAAGAAGCCAGTTTGCAAATATGGCAAGGATTGCTATCGCCGTAATCCACTACATTTGCAAGCATACTCGCATCCAGAAAAGGGAGAATCGTCAAATGAAAGTAAAAGAATGAAAACCAGTGATGCAGGAGAACATAGTAGCACAATGATGtcaatgaatgaaaatattgaagTCAATAAAGTCAAAACAGTTCCATTTTTACTGACCAAAGTAAGAAGCATTCCAGCTGAATTCAATAAAATGTCACTTGCTGTTGGATTGAGAGATATTCTGTCTGCAAAAATGGGAGACCTTCAGGCATCCGtccagTTCAACTACATGTTCGACATTCCATGGTTGCTTGATCATTATCCATCAGATAAGAGATCTAAGCCTTTGCTTATTGTTCATGGCGACCAGAATGAAAAGAAGAAACAATTGGAGAGGGAGGCAGAACCATTtccaaatgttaaattattgcAGGCCAGACTTCCAATTACCTTTGGAACACATCacagTAAAATGATGCTGTTATTGTACACTGAAGGAATGCGAGTAGTTATCACCACAGCCAATCTTATTCACATGGACTGGGATCAGAAAACGCAAGGAGTATGGATAAGTCCACTTTTTCCTAAATGTTCTGAACGTGGGAAAAATGCCACAGAAAACTCACAATTCCAAAAAGATTTACTTGATTATCTTAGTCAATATGGTTCTGGACCGTTAAACGAATGGAGACAACATGTTCTGGAACATAACATGTCAGAAGCAAGGGTTCATCTCATCGCTTCGGTACCTGGCAGACACACTGGATCTGATAAGGACAAATGGGGACATCTTAAATTAAGAAAGTTGTTACAGCAACATGGAAGATGCGATGACGCGAGTGTACAATCTTGGCCCGTGATTGGTCAGTTCTCAAGCATCGGCTCGCTTGGCGGGAACAAGACAGGCTGGTTGTGTTCTGAATGGTTAAAAAGTCTAGCAACGACAAGCAAGTCCATCCTCACAAGCAAAGCTCCGAATCTACATTTGATATTTCCAACGGTTGAAAATGTAAGGACAAGTTTGGAAGGGTATTCTGCTGGTGGATCTCTGCCGTACAGCTGGAAAACAGCAGCGAAGCAACCCTATTTGAAAGATTTCTTTTGCCGTTGGGAAAGTGACCGTTTGGGTCGCAGTGAGGCTTCTCCCCACTTGAAGTCTTATACAAGAATCTCACCTTGTGGCAACAAGGCTGCTTGGTTTGCGATGACCAGTGCGAATCTCTCGAAAGCTGCTTGGGGTGCACTGGAGAAGAATAATTCTCAACTAATGATCCGTTCATACGAGATTGGCGTTTTGTTTCTGCCTCAAGACCTGGATGTTTCGCAAGAGTATTTCAACCTGACCCACCGCGAAACCTCTGAGGAGTCCAGTCCAGCAGTTCTAAGATTGCCCTATGATTTCCCACCGACACCTTACACGAACGAAGATGTCCCTTGGATGTGGGATCGACAATATAAAAAGCCCGATGTATTTGGAAATAGTTGGTCACCGTGATGCATGATGGTTAATCTGATGGAGTTCCAGTCATCGTGCGCTCACTACTCAACTCAGTATCTCCAGCTACGCCAATTTTGAACACTCGAGTTAAAAGATATCCTCATTCTCTTCCACGCAGTACTTCAAGATATATTAGAATTAGAAGACTTTCTATTCTCCGTGATACCCACGCGAATCCATTCAACACTTTTGAATACAAtccaaaattaaataaatcagTTGGACTTTTGTTGAACAGTTTTTGTATTTCATTTGTTAACGCTTTTCTGGGTTTTCGGGGGACAATCTGGGTTTTCGGGGGGACAATCTGGGTTTTCGGGGGACAATCTGGGTTTTCGGGTACAATCTGGATTTTAGGGGGTAATCAGTGATTTTAGGGGGTAATTcagcatacatgtacatgtatatggtgTATTTTAGCAAAATTGCTTCTCTTCGGAGATTTCGCTCCCAACCCCCTGCAACAGTATAAGTAATGAACGAGAATTGTGGGTACACCTGAATACGAATTTCCAGGAAAATATTACGAAAGTGcgtagtttttgtttttctatagacaGACTGCATCGGTATATGTAATTTTGACGTTTTACAGATTACAAAATATAACTTGAGCTCTCAAAATAAGGAGAAAATAGCTAAAGTGACCCACGTGCTTAGGTAAAATCTTAGTTTtgtattaaaggagaactgaaactgaatttcagtttctttgatatgcaaattacacatatgacgtaatTTATGTGCAATACGtcgtgtaatttgcatatcaaagaaactgaaatacctaaaaaacgaagcaagggaatcaaaaactgaaagagaacttactctgtcattttaagtgttctttcaaataagacaaacttgattttagggttcagttctcctttaaggaTACGAGGGACTTTAAGCAAACAAGAACG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06087 all species →	Tyr-DNA_phospho	Tyrosyl-DNA phosphodiesterase	Family	Interproscan
PF10283 all species →	zf-CCHH	PBZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010347 all species →	Family	Tyrosyl-DNA phosphodiesterase I	Interproscan
IPR019406 all species →	Domain	Aprataxin and PNK-like factor, PBZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12415 all species →	TYROSYL-DNA PHOSPHODIESTERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0017005 all species →	Molecular Function	3'-tyrosyl-DNA phosphodiesterase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10862	TDP1; tyrosyl-DNA phosphodiesterase 1	EC:3.1.4.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.