Gene detail

Detailed information of ENSFVQP00000029345.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Callogorgia gracilis · all data for this species · gene families

Sequence

CDS

Transcript

ENSFVQT00000032850

AAGTGATCTGTTGTTTTGTGTGTGTTGTAATTTTTTAGTACGAACCACTTTTGGCGTTATTTAGTCAAGAAAATGATGCACCAGATGGGCGCACAGGCACGTCCATTCTCCCATCATACACAAGTTGCTCCATTGTCTGATGCAGAGCGAGAAAATATCTACTCTTGGATTATTGAACTTTCTAACGGAGAAACACGGGAGCATGCTCTACTTGAACTAAGCAAAAAACGAGAAGTAGTTCAAGATTTGGCTCCAATGTTGTGGCATTCCTTTGGAACCATTGCAGCACTTCTTCAAGAGATTGTTAACATCTACCCTGTTATAAACCCCCCAAATTTGACAGCCCATCAATCAAATAGAGTGTGTAATGCATTAGCCCTGCTTCAGTGTGTTGCATCACATCAAGAAACCCGGACATCATTTCTGCAAGCGCACATTCCACTTTTCTTGTATCCTTTCTTACACACCACAAGTAAAACAAGACCTTTTGAATATCTCAGGCTTACCAGCCTAGGAGTGGTTGGTGCTCTTGTAAAGACAGATGAACCAGAAGTTATTAATTTCCTGTTGACGACAGAAATAATCCCATTATGTTTACGAATTATGGAGTCTGGAAGTGAATTatcaaaaactGTGGCAACGTTTATTCTTCAAAAAATACTTCTGGATGAAACTGGGCTGTCATATATCTGTCAAACTTATGAACGTTTTTCACATGTAGCAATGATACTGGGCAAAATGGTGTTAGCTTTAGCAAAAGACCAGTCGGCGAGGCTTCTTAAACatgttgtgagatgttacTTGCGGTTGTCAGACAATCCAAGAGCCAGGGAGGCACTTCGACAATGCTTGCCTGACCAGTTGAAAGATGGGACGTTTGCCACGTGTCTCAAAGACGACGTGTCTACAAAGAGATGGCTAAGTCAACTGATGAAGAACTTACTTGAACCGCCGCCAACAGATCCTAGAGGAATTCCCTTACCACCGTAGTTGGAGTATCTAAGCACATAAAGTTTATTGTAATATAAGGATGGTTGTTGTAGTTCAATTTTTGTATATCGTGACATGCGGTTTTTCATTAGCCTGTGCCGCAGACGACAATAACACTGTTACGTGCTATTGTCGTCTACGGTGCAggctattttttatttgttcgtAATTTGAAATAACAAGCTATAAAACACCAGAAAATCTAGTTGATATAATTTTGTGGCAACATATCAGAGTACTAAAACGCAAAATCAACTGCCATGCAAGGACTCAAAAACAACTTCTCAATGAAAATAATACCCCCTCTCCATGTCATTTTAATATACGATTTGGTTGGAAcgattatatacatacagtaacaTCATATAGCACATCGAATCAGAATTGTGACTGATATTGGTAAATCATGGATTGATAAATCATAGATTCCTAAAATCCCTTAAGCATGATGAATATTTGTGCGATGAGAGAGCATGTGTGTATATAGAACCTTGAAAAACGTGTGAACGATGTTCACAGCGTCACGTTGTGTGTGCTTTGCTGTTTCCGTTCTCAAAACTATGATCCAGATAGGAGCAGCTGGAATAATTGTTCACGTGATCATTGAATCTGTTGAAGAAGGTGTGCCTCCACACTTGTAACATTTCAAATCCTCCGCCGAAGACTGAAATGAAGAAAGACAATGTGCTGATGACTAATGTATACCAGCGCAGCCACGAATAGTAATACAAGAGAACAGGGACAGTGAGAGCAAACGTGCACCAGTATAAAATCCAAAAAACAATCTCTCGATGTACGCTCGCCTCTCGACTAGTAGCACTTTTCTCCTCGTTGTTGACATCAAATTTTCCGTTCTTATAAAAAGCCTCCAAAGTTTTCTCCTTTTCATCCCATATCTGAGTACACCATTTCTCAAGACCTTCGATAGTTTCAGGAATTTGCTCAATCGGGTAGCGCTTTATGTGAAAATAAACTTCTTGTGGAAAATTGCCCATGAGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04078 all species →	Rcd1	Cell differentiation family, Rcd1-like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007216 all species →	Family	CCR4-NOT transcription complex subunit 9	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12262 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0030015 all species →	Cellular Component	CCR4-NOT core complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12606	RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.