Gene detail

Detailed information of ENSFVQP00000031332.1 in Callogorgia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation CGRAC1 · all data for this species · gene families

Sequence

CDS

Transcript

ENSFVQT00000035213

ttccaatatggcggaatTGTATACAAACGCGGCTAGAATTGTTGAAAAGGTTTTGAAGAAACAAGGTAGCCCCAAGTCGTTGGTTATTAACAATGAAAATGTGAGGAACAAGAAGAAATTGTACGCCTTGGTTTGCGAAGCTTTGAAATTTAAATCTATAACAGAGCAAATAATGGAGGATACTAAGTTGTTATCAAGAGAAAAACAGTTGAAACACCCAATGGCATTGGTTCTCTTGTATGACTTTCTTTTTGGGAAAGGCCTTCAGCTTGGTGGCAAACTAAAACTGATCgtaaacagaaataaaacTGGTCTGCATGCTGCTCTTGCAAGAATGAAAGTAAAAGCCAAAGTTCTCAGAAATGAAGACCTTCTCCCACAGAATATCCGAGACCAAGAAGaatttaaaattcCTCGATATGTCAGAGTGAATACACTGAAGATGTCAGCAAGTGATGTGGTTAATTGGTTTTGTGATAATGGTTACAAAGTTGAAGATCACAACACTAAAACAATCAATTTTTCAGAGCAGGTCACCACTCAGTCTCCAAAATCCTTTGGAAAGGATGTTCATGTTCCGGATGTTTTGGTTTTCCCACCTGGAACAGACCTTCATGATAACACTTTGTACTGTGAACGAAACATCATTCTCCAGGACAAAGCCAGCTGTTTTCCAGCATTTGTCCTCAGTCCCCCACCAGGAAGTTGTGTGATAGATGCTTGTGCTGCGCCTGGAAATAAAACAAGTCATCTTGCTGCCATCATGAAAAATAAAGGcaagATCTTCGCTTTTGATATTTCTGCCAAACGCATCAAGGTAATGAAAAGATTACTTTCCCAAACTGGAGAACAGATCACCGAGATAAGAAATGAAGATTTTCTGAAAACTAATCCTGAAGACCATTCGTATGAAAATGTCCAGTACATCCTGGTAGACCCATCTTGTTCAGGCTCCGGGATGGTTAACAGGCTGGATTATGTCACGAGTAATGAAGATAAGATGGACATTGAGGAAAAACAGAGGATCGAGTTATTGGCTCAGTTTCAAGTAACAGCATTATCTCATGCTTTGAGCTTTCCAAATGTCCAGAAAGTCGTCTATTCCACTTGTTCCGTTCACAATAAGGAAAACGAGATGGTCGTAAAAACAGTTCTTGAGAAGTTCCGTGAAACATTTAAGCTGGACAACGCCCTACCCGCCTGGCCCCATCGTGGTCACCCGCTGTTTCCCAAAGctaaAAATTGTGTGCGAGCATCTCCTCGTGAAGGTTTGACCAGTGGATTTTTCCTCGCACTGTTCACGAGAAAAGATGGAGAGGAAGGCACGAAGGGAAAAGCCGGTGAGGATGATGGAGAAATGGCaaagaaaaggaagaagaaaaagaagaggaAAAGAAAGCACGATCAAAGCGTACCTGTGATAAACAATGTCGAGATAACGAAACGACGTAAAAAAGTGGACGTCGAAGAAAATAATGCGATTACGGAAgcgaaagaaaattaaaaacaatcgTAGTTCCATTTCCTCTACACGACCATCAGGTTTCCGTgttgaagtaatgtttaaaacacgaacagcagtgttttatcaagtttaaaaattcgagggcgttgcccgagaatttttagacttgataaaacacgtgctgtgagtgttttgaacagtttTTCAATggtgtttcatgtttcatggTTTTCAACTCTGATTAAATTTCAACCAGTTCCGGGTCAATGTACAGGTGCCACCACTTTTAATCCACACCGACAATTCGTTGTTCCAACGGAATTGTTAAATCCTTTATTCAACTGATGAGTATACATAGtgtgattaaaaaaaaaacattaaaaacgtGTGATAAAATAGAACAAACGACGGTTTGTGAGACCGAAGGCAAATATTTCAGCCCCAACAGATCGATAAAAAACCCCTCGTATTTCATCAATATCTATCAAGGTTCTATCCCAAACAGGCCAGCttcccccccaaaaaagttgtgatcattcaggtcactcactgttgtgtctcaaaatcataaatattttaatgcaccagattgcatctcagcacatatccatttccaaaaaattcggATCCCCCTAGAATACTCCTGGCCACTCGTTCGGCCACTCGAACTGACTTCTCCCCCAACcgaaaaatcctagatagaaccctgtctatttataataaaaagttCTGTCCAACCATGTTGAATAATGCAGATTAAAAATATCCAGTTGgcattgtatttttattatctGTCCATCGCTATTGTTTGCATATAAACAATGTTCAATAGGAGTAATATGTATGACTATATGTctataaatacaaatcgaaatataaaaaggtcggtgtactgccaatacggatagtatagtctaacgtttcgagcattggc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21153 all species →	NSUN5_N	NOL1/NOP2/Sun domain family member 5, N-terminal domain	Domain	Interproscan
PF01189 all species →	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan
PF21148 all species →	NSUN5_fdxn-like	NOL1/NOP2/Sun domain family member 5, ferredoxin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048889 all species →	Domain	NSUN5/RCM1, N-terminal domain	Interproscan
IPR023267 all species →	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR001678 all species →	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Interproscan
IPR049560 all species →	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan
IPR049561 all species →	Domain	NOL1/NOP2/NSUN 5/7, ferredoxin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22807 all species →	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0070475 all species →	Biological Process	rRNA base methylation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15264	NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferase	EC:2.1.1.311	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.