Gene detail

Detailed information of ENSJVNP00000002265.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: XP_020617624.1, RNA-binding protein 41-like [Orbicella faveolata]
Species abbreviation EHORR · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96IZ5	RNA-binding protein 41 OS=Homo sapiens OX=9606 GN=RBM41 PE=1 SV=2
Q8JZV4	RNA-binding protein 41 OS=Mus musculus OX=10090 GN=Rbm41 PE=2 SV=1
Q8RWV8	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP65 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005017 (this species only)

Pfam domain

No Pfam domain signature was detected for ENSJVNP00000002265.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR045164 all species →	Family	RNA-binding region-containing protein RBM41/RNPC3	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16105 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0030626 all species →	Molecular Function	U12 snRNA binding	Interproscan
GO:0097157 all species →	Molecular Function	pre-mRNA intronic binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJVNP00000002265.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.