Gene detail

Detailed information of ENSJVNP00000006849.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: XP_020631284.1, uncharacterized protein LOC110068241 [Orbicella faveolata]
Species abbreviation EHORR · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DAQ1	3'-5' ssDNA/RNA exonuclease TatD OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=tatD PE=3 SV=1
D0KC77	3'-5' ssDNA/RNA exonuclease TatD OS=Pectobacterium parmentieri (strain WPP163) OX=561231 GN=tatD PE=3 SV=1
C6DI71	3'-5' ssDNA/RNA exonuclease TatD OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=tatD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005846 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026 all species →	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050891 all species →	Family	TatD-type Metallo-dependent Hydrolase	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001130 all species →	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10060 all species →	TATD FAMILY DEOXYRIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03424	tatD; TatD DNase family protein	EC:3.1.21.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.