Gene detail

Detailed information of ENSJVNP00000011419.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: PFX24054.1, Coatomer subunit delta [Stylophora pistillata]
Species abbreviation EHORR · all data for this species · gene families

Sequence

CDS

ENSJVNT00000011499

CAGGTTCTTCTCGCTGCAGCAATATGCACCAAAACAGGCAAAGCTATTGTATCACGTCAGTTTGTAGAAATGACTCGATCACGTGTGGAGGGTCTTCTTGCAGCATTTCCAAAACTGATGAATACTGGAAAACAGCACACGTTTGTGGAAACGGAAAGTGTCAGATATGTGTACCAGCCACTTGAGAAGCTCTATATGCTTCTCATCACAACTAAAGCCAGTAACATTTTAGAGGATCTAGAGACCTTGAGATTATTTTCACGTGTGATTCCAGAGTATTGCAAAGTAATGGAGGAATCCGAGATAGTAGAGAATGCCTTCTCACTCATCTTTGCTTTTGATGAGATTGTTGCTCTTGGCTATCGTGAAAACGTAAATCTTGCACAAATCAGAACATTTACTGAGATGGACAGTCATGAAGAGAAGGTGTTCCGTGCTGTCAGAGAGAACCAAATGCGTGAAGCCAAGGAAGAGATGAAAAAGAAGGCAAAAGAGTTACAGGCTGCCAAAACAGCGGCCACAAAAGGCAAAGGTTTCAAAGGACATATGGCAGGATTTGGAGGTTTTGGAGGAGGAGGTCGTGATTCAGCTGTCTCAGTGGTTAATGATGTTACTGTTGTTGATCCTACACCTCCAAAACCATCATATCCCACAAGAACTGCTGGCAGTGGAAAGGCAATGAAGTTAGGAAGTAAATCAAAGGATGTTGACAGCTTTGTTGACAAGTTGAGATCAGAGGGTACAGATGTAGTAAGTTCCAAGACAAAATTAACTTCAACTGCAAAGACCACAACAACACCATCAGTCCAAATGGGAAGCGTCCACATAAAGGTTGATGAGAAGATAACGTTGACTGCAGGAAGAGATGGTGGTCTGCACAACATGGAAATCAGAGGTCTTGTTCTTCTGAGAGTGGCGGATGCACAGTTTGGAAAAATACGGCTTAGCTTGGAAAACAACGACGACAAAGGATTCCAAATGCAGACACATCCAAACATAGACAAGAAGTTATTCAGTCAAGAATCCATAATAGGTCTCAAGCAACCAAACAAACCATTTCCTCTTAATTCCGAAATTGGTGTGTTGAAGTGGAGACTACAGAGTACGGACGAAGCACTAATGCCATTATCAATCAACTGCTGGCCTTCAGAAAATGATGGACAGTGTGACGTCAACATAGAATATGAACTCCTCCAAGAAAATCTGGAGCTAAATGACGTCGTCATTTCAATCCCAGTCCCaaacgttttgaaaatacaaggaAAAAAGGGGGCCACGGTAGATCGATACATGGGAGATGATGAAGATGAGTCTGGTCAACGGGATGAAACTTCAAGACTTGCCCAATTACAACGTGTCATCGCGGATCGAAAGAGAAAAAGGCAATCACTCGGTCAAGAAGAGAATAACCACGTGAGTTTGAACAACTTGGagattttgagctccaaaaagCTAAAATCTGATGCGCAAGAAGAAGTAAGCTTACCAAAGAAAGGCagggaaaagaaagcaaaacacgcaaaagaaaaatcaaacaagaaaaagaagaaaaggtcTTCAGAGAAAGGTACATCAATGGAAGATGTCACGGAGCTTTCTGTTGAATCTGGCATCTCGGCGGATAACTCAGAAGGGATTAAAGTGACTAAAGTTACGAAAAAGGAGAAAGCGAAAAGATACAAAGATAAAGATGTGTCAAAggaaaaaagtattttaaaccGTGAAAGAAATAGTGAGCATGAACCAGACGACATTACTCAAGAAAAACAAGATATCCCAGAGGAAACTCTAGGGGAAACACCAGAGGACAACAGTAAAGAAACAGGATTTACTGTTATAGGAGGTCAGAAAAAAGGCAAAGAAGTCAAAAAAGTGCAGAGAGTATTGCCTGACTGGCTTGCTAAACCTACAACTATCAACTCTGACTTTAGCAGCAACTTGATTCCTGTTGAGAAAATTTCTTACTTGGCTGCACATATAATTAGAAAACTGGAACAGCATGATATAAATCACTTATTTCCTGTTCAGAGTGCTGTGATCCCTGCCATACTATCTCAGATGGAAACCGACAGTTGTTTTGGCATTGGTGGTTATCAACCTAGTGACATATGTGTGTCGGCACCCACTGGAAGTGGCAAGACCCTTGCATATGTGTTACCTATTGTGCAGAGCTTGTTAAGAAGGGTAGTATGTCACTTGCGAGCCTTGGTCATCCTCCCCACTAAAGATCTTGCAAACCAGGTCAAACAAGTATTTCAAATGTTTACTGAAGGAACAAACTTACGGGTGGGACTAGCATCTGGATCTAAATCTTTCTCTAAAGATCAGGAACAGCTTGTTAATCCAAGTTCCTGTGGCAGTAGCAGTAGGATTGATATTctcatttgtacacctgggagGTTAGTTGACCACATTTCCTCGACTCCAAACTTCACTCTTCATCATGTAAGGTTCCTGGTGATTGACGAAGCTGACCGTCTCTTGGATCAGTCTTATCACGACTGGCTCAGTAAAGTACTCAAGGCTGCCTATAACAAACAATCTACAAGTGGTGTAATCAAAAATGACAGGCCCGTCTCTTGTAGCCTTCAAACAATCAGGAGTCCCCCAGGATTGCATACTGCTGCTAGTTTCGCCAGCATCCAGCTTCCCTTACAGAAGTTGTTGTTCTCGGCAACAATGACACACAGCCCTGAAAAGCTTGCTCCTCTGCAACTGTATCAACCAATCCTGTTTACTGTGACAGCAAGTGTCACTCAAACAAAAGGCACAACAGCTGTTCGTTACAGCATTCCAGAAGGACTATCAGAGTACATGACAGTTTGTAACAATGGAGAGAAGCCTCTTATGGTGTTGTACTTTTTAACCCACTTGAAGTTTCAGCGAGTTTTGTGTTTTGCATCTTCCCTGGAGGCTACGCACAGACTTTATCTACTCGTGAAGCTGTATGGTGGCGTGCAAGTTGCAGAATATTCTTCAAGTTTGACTCCTCGGCAGAGAAAAGGAATCTTACGCGACTTTAAAATCGGCAAACTACAACTTCTTATTTGTTCCGACGCCATGGCGAGGGGAATGGACATACAAGATGTGTCATACGTCATCAGTTATGACGTACCCAACTACGTCAGAAGCTACATTCATCGCGTGGGAAGGACAGCGAGGGCGGGAAATAAAGGAACGGCCATAACTCTTCTCCATAGCGATGAAGTGCACCATTTTAAAGAACTAATTCAGAAGACAGGCCGCGAAAAGATTGTCAAATACAACATCAAAGATGAGAAGCTACAGTCAATGGTGGAAAAATATCAAGACACGCTGGAGAGACTGCAAGATGCTGTGAAGTTAGAAGGTCAAAAGAAAAGTCAGCAGAAAGGAAGacatgaaattataaaattattacAAGAACAGTTTATGAGCAATGTGCTTCAAAGAAACTCTGAAGAAAACCATTAG

Transcript

ENSJVNT00000011499

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53619	Coatomer subunit delta OS=Bos taurus OX=9913 GN=ARCN1 PE=1 SV=1
Q5XJY5	Coatomer subunit delta OS=Mus musculus OX=10090 GN=Arcn1 PE=1 SV=2
Q66H80	Coatomer subunit delta OS=Rattus norvegicus OX=10116 GN=Arcn1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005634 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01217 all species →	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR022775 all species →	Domain	AP complex, mu/sigma subunit	Interproscan
IPR027059 all species →	Family	Coatomer delta subunit	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10121 all species →	COATOMER SUBUNIT DELTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan
GO:0051645 all species →	Biological Process	Golgi localization	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14807	DDX51, DBP6; ATP-dependent RNA helicase DDX51/DBP6	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.