Gene detail

Detailed information of ENSJVNP00000012378.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: KAJ7376666.1, leucine rich repeat [Desmophyllum pertusum]
Species Echinopora horrida · all data for this species · gene families

Sequence

CDS

ENSJVNT00000012467

ATGGCAACAGGAGAAAGTGATGATGTCGTTTCCACTACTTTTCCAAAGGAGATCTGTTTTATAGATGCACAGCTTAACAGTCTGTTTGAATTCCATCTGGATCCAGGTTTGATTTCTATAAATCTGCACTGCAACAACATTTCTGTTATAGAAAATCTTGAGCGACTTCAGCACCTCAAGCATCTGGATTTGTCGTCAAATCACATTGCAAGAATCCAAGGACTTGGTGGTCTGAAAAGCCTCAAGACCCTTAACTTATCCTGCAATGAATTGCAAGTTGTGGAAGGACTTGAGAATCTGAGGAATCTAATCAGGCTGGACTTGTCATACAATGTGATTCATAATCTCTCAGGGTTGAAGAAACTTCACGGACCTGCCTTTAACTTAAGGAACTTATAtctccatggaaaccagctcaCCTCACTGGATCATGTAATCAGTTGTCTGATTGGCTGCAGAATGCTTAAAGAACTAACACTGTCTCAGTATGGAGAAGCTAATCCCGTGTGTGAGATATCAGCTTACCGTTCCAGTGTACTCACAGCTTTGAAAACACTAGAAGTGTTAGATGGGCTTGACCGGACAGGGAAGCCAGCAGCAACAAGAGACATTGTATTTATGGAAATGGAGGACTATATAGAGTACCTTAAATCAGAAAGTTCTACTGAGAGCCCTTCGTATGAAGTCATGACTCCAAGAATTGACTCAGTGCTGGACAGATTTAGACAACGAGGACCACTGCTATCATCAGAAACTGACACTGGGGAGGAGATAATAACAGAGGAGCCTCCAAGTGTGTcagCAAGAGTCAGCCTGTCAGCTGATCATGAGGTTCGTTTAGAGACGCTTGAACATCAGCTCACTCGTCTGATTCACAACACAGTAAaAAACAGCAACTCTGACGAGTCTGAATCGAATGAACAACCtgataaaagaaaacaagttcaGCGATCTCCCAAAGCTAAAAGAACACAGCGAATGCCAGTTTCCAAGAAGGGACCAACAAAGACGAGAGCAAAACCAACTGTTCATGTCACAGTCGAATCAACAAGCTCCACTTCACCATCAGACCAACAAGCAAGAAATCTTGCGATCAAAGGCAAGGCAGTGACAGGACGGGCAGTCAGAGATCCACGAGATGATGAAACACATCTGTCACTCATTCAAGAACTAGATTCTGAACGAGAGCGACGCTGGAAAGCTGAACAGGCTGCCAGAAGAATGGTTGACGCAATTAAAGAGATGCAACTGAAAGAGACAGAGGAGAAAAAACTAAGAGAAGCTTCGCTGGCGGCAAGCAGTCGATTAAAACGTGCGCTGcttaaagaaaaggaaacaaagGATTCTCTGCAGAAAGCTTTAAATGAAATGCAGGCACAAAATATTGGGCTTAGTGAAGAAGTAAAAAGGCTGAAAGATACTGAGGAAGAACAGCAGAGAGCGCTGCGAGCATTGGAACAAGCCACAACAAAGATGGAGACAGACAAGATCAAACAGCATGCTGAGGCGGTTTCTCAGTTACAACAGGAGCAGATGAGGGTAGGCGCCTTGACAAAGGAGTGCGAACTGTCAAAACACTCAGTTAAACAACTGAAGGGTCAGGTACATCAGCTACAAGAACTGCTTGCTAACAGAGAGCAGGAACACAGAAAAGCAGTGGAAGGCCTGGTACGAGCGGACAGCCAGGAGGTGCGCGAGATTGTAGACCGGGAGGTCGCTAAGCAGGAGGGTCTTCATCAGCAGATCATTAAAGATTACCAAGAAAAGTTGAACAAGCGAGACGTGGACTATGCCGCCTTGGAAGACGAGTTTAGAATGGGTCTTCAAATAGAAGCCAATCGATTCAGAGAGCTTCAAGAAGCATTTGAACGAGTAAGCGATGAGAGCGCTCAGCAGAAAGAAGTTCTACACACGATTaaacagaaagaaaataaagcaacCACCATGGTGAACGAACTCACAGCAATGGTGAAGGAGCAGCGTGGAAGAATCACTGAACTGTCGCGTGGGAGACAAGAAATAGTCGGGGATTACAGGGAAAGAATACAGAGCTTAGAGAAACAACTGAACGAAGCTAACAAACAGTTGACGAGATTAGAAGTACTGGAACAGGACAAAGCTAAGTTAACGGCTCAGATACGAGCACAAGGATCAGTCATCGAGGGACTGAGAAGTGAAAGGAAGTTATGGAGCGAGGAACTCGCACAGCAAGGATCTTCACTTGCTCAAGATCGCGGACGAATGGAAGCGCGCATTGAAGCACTGACAGCTGAAGTTAGCGAGCTGAAGAAGGAATGCCAGAGTGCCAATGAAACGATAGCTATCAAGGCCAAAGTTATCGAGGATCAGACGGACTCCATTAGAAAACTCAAACAGGAGCAAATGGATGCGCTCATTGACCGCAAGGAATCACTCAAGCAAGAACTGAAAAATACACAAGATGAGCTTCAGACTTGCAAAGAAAGTCACAGTTCCGCTGTGGAGAGGTTAAAAGCTTGTGATGACGCTTTCCGCAAACAGCTCGAGCAAGAAAGACAGGCACATGAACAACAGATTCAAACATTGACCAATGAAAAGCAACGTGAGATAGAACAGGCCAACACTAGGGTAAGAAATGATAAACTTTCTAAATCTCAACACCAAACCCAACATTACATCAGTAAACCCTGTTATTTAATATGTGGAatgttttcaaatgcaaatgttaatgcaaatgacattcatCTTTTTTTAATATTCCCCCggatgagcctccattgcatgCTAGtgccagtccaataccgagtaCACGAATATGGCCTGTCTCGCTGGTTCTTTTGA

Transcript

ENSJVNT00000012467

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRC9	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=lrrcc1 PE=2 SV=1
Q69ZB0	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Lrrcc1 PE=2 SV=2
Q9C099	Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=LRRCC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003961 (this species only)

Pfam domain

No Pfam domain signature was detected for ENSJVNP00000012378.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR050836 all species →	Family	SDS22/Internalin LRR-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46652 all species →	LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16475	LRRCC1, CLERC; leucine-rich repeat and coiled-coil domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.