Gene detail

Detailed information of ENSJVNP00000015165.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: RMX41210.1, hypothetical protein pdam_00013238 [Pocillopora damicornis]
Species abbreviation EHORR · all data for this species · gene families

Sequence

CDS

ENSJVNT00000015286

ATGGAGTGGGAAAACAAGTTTTCTTCTATTGTTCGTGAAACAGAGACGAACCTGGCAAGAGTGCGGGATCGCATGGGTTCTGCCAGTAAAACAAAAGCGTTCCACCCCAGGTCAAGTGGACACCCTGGCAATCTTTGGTCCCAGGTCTCAAGAAGCCCACATAAAAGTACAGTAGCATGGGACTTGCAAAGTAGTAAGACTAGTCCAATAAAAACGGTTGGCATGGCAACTAGTGTTCCATCTAGTCAGACGTCACCTGCTCTAGTGAACGCATTGTTTGAAAGAGTTGAGGAACAAGCAGAGGTAGTGAGTCATTTAACAGACACAGTTAAGAGACTGGAGAAAGAAAAAGATGTGCAAGCTGCCGAGATAAAgaatatgaaagATGAAATGAGCAGCCTAAGTGAGAGGCTCAGAGAAAAAGGAGTGGACATGGAAACAGAAAGAAAACTAGAACAAGTATGCTTCCTCCTTGACAAATTTGTAACCATTTTTGTGTTCAATTGTACAACTTTTTACAGGAGAAAAATTATTGAAGATGAAACAGAGTCTTTACAAAGGGATATCAAGCAGCTAAAAACAAAGCTGGGTAAAATAGAATTGGAGTTACACTCAATCCTTGCTGAGTCAAGAGATGTACTTCGCAAACAGGACCGATTAGACAGGGCTCTATCATCACTCTCAGAGAATCAGCGTTCACAGTCAAGGAGTTTAACCAGCCTTGTTGATGAGAGACAGTCAGACTCCTATGACATACGGCAACTCAAACACCTTGTAAACAAAGTTAGTCATCAGTATTCTGAATTGGAATCTGAATTGCAGTCCAGCATCAGGCATTCAGGAGTTTCAAGTAGAAGCTCTTCCCTGAGACAGCCCCAGCAACGTGGGTCCAGGGAAACAAATATAACCAATGGCAACTCCAACACAAGAAGGAGAGGTGTGAAGAAGTCTAAAGCCACTTCAGACGATCTTGTGCTATCTAGCAGCAGTGACACTGATCTGAGTTTGACGACACTGGATATTAGCAGTCCCAGTGACACAGAACTGATCTCCTCTGAGTTTCCCAGATCCAATGGAGGTAACCAAACTGTGTTAAAATATGATGAAGCTCCCAAACCGACAACAGCTCTAGATTACACATTTGGACGGAGAGCTAAAACTGGACATAATATTGGAAAAGACATAGGCCACATCTGGGAACTTGGAGGTGGAACATTTCTGTCCAAACTGATTGATATTCCTCTCACTTCTGCTACAATTAGGAGTATGGCTATTGTGATTGTATTAGACCTGTCCCTTCCAAATGAACTCTGGTACACTATGGAAACACTTCTCTCTCAGGTGAAATCTAAAGTCAATAAAGCACTGGAGGGTCTAGAAAAAACAGAGCCAAAtcctGTTCAGCAGCTTAAGAAACAAGCATGGAAGAAATTTGGAGAAGAACATCCTGATAAATCTTCTGTTGATCCTTTTCCTATACCTCTTGCCATAATTGGTGGGAAATATGACATTTATCAGGATTTTGATCCTGAAAAACGAAAAATGATCAGCAGAGCGTTACGCTTTGTAGCGCACAAGAATGGAGCTCATCTTCAGTTCTTTAGCACCAAAGCTGAGGGCCTGACGAACCGCACCCGGGGTCTAGTTGGGTCACTGCTATTCCGCACCCCACTTAGTAAAGTGGTATCAGTGGATCACAACAAACCCATCATTGTTCCAGCTGGCCAGGACTCGTTATCTCAGATTGGTGAGAGCGTTTTCACTGCCATCACTTCTCTCCCGGATCCAACAGAGCTTTGGAAGGCCGCCTTCTCCGCGTTTTTTCCACCCGAGAAATCCCAGGGCCGCAGCACTAGCGAAGATCCTTCTAAAGATCCTCAATACGCTGAGCCAGCGGTCGACACTATGCGGAAACAGAAAGATGAGGAACTTGAGAGATACAGGAAGTTAGCCATGCGAAAGGTGCGAGACGCATCCAAGGGGACTAGAGCAGAGAAGCACTCACGGTGA

Transcript

ENSJVNT00000015286

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32KV4	Cytoplasmic dynein 2 light intermediate chain 1 OS=Bos taurus OX=9913 GN=DYNC2LI1 PE=2 SV=1
Q8K0T2	Cytoplasmic dynein 2 light intermediate chain 1 OS=Mus musculus OX=10090 GN=Dync2li1 PE=1 SV=1
Q6AY43	Cytoplasmic dynein 2 light intermediate chain 1 OS=Rattus norvegicus OX=10116 GN=Dync2li1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005835 (this species only)

Pfam domain

No Pfam domain signature was detected for ENSJVNP00000015165.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040045 all species →	Family	Cytoplasmic dynein 2 light intermediate chain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13236 all species →	DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0035735 all species →	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJVNP00000015165.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.