Gene detail

Detailed information of ENSJVNP00000023978.1 in Echinopora horrida

Genomic Location: chr3:21187903...21194773
NR annotation: XP_020606102.1, inner centromere protein-like [Orbicella faveolata]
Species Echinopora horrida · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSJVNT00000024144

ATGGCCGTCACCTGTAACTCCAAGGAACGGCTGCCACTTGGATTTTCTTTGCATCTCCGAGCCGAAGAAGCGATAGCAAAGTTCCAGAGCGAAATCGAAGAGGACGACTTTAACTATCTTCATGAGATCTTAGCTGAAGCCAAACAACACTTTGGACGGCGTGACAGCAACGTTCTCCTTCCGAAGACACCATCAATGAAAAGGAAGCGCCAGGAGAGTGATGAAGAACAAAGCAGTGATGACACTGCATCCAAAACAGAAAGAGGAGCAAAAGCTCATAAGACCCAAGGGTGTTCATCACCACTTATGGTTATTAATGAGAATGAGCTCCTGGACTGTAGTGTTACAAATGAGGAAGGTAAGCTAGATGGAGCCAAGAGAACAACAAGAGCAAGTAGAACAAGCCGAAATGAAAAGAAGCAACCAAAACGAAAGCAGCCAAAGAGAGgatcacaaaaaaataatttgccaGATGTTGGAAGTTCAGCTGAAGACCAGACTTCAGATTCTTCTTCCATGGATGACAAACCAAGATGGAATACCAGGAATTCAAAAAAGAAGAACTCAGAGTTGGCAAGAGTGATAGAAGAATATGGATCAGATTCTTCTTCAGTAATTGTTGACGAGGAAGACTCTTCCAAAAGAGTAACTAGAAACACTAGAAAGAAACCTCAGAAAGAAACTGTAGAGGTTTCTTCTACCAAAGAACTGCCAACAAAACCTGCAAAGAAGAAAAGTAAGTCAAATGTAGCCACAATATTGAAGGATTGTGGAGAAATTATGGTGTCGGTTGCTGTGGAGCAAGAACCTGCATCACCTTTTGACAAAATTCCTAAAAGGAGAAGCACAAGGAATGCAAGAAATGAAGAGGAGTCAGTAGACAGTGAGAAAAAAGAGACTGAAAACAGAGCTCATGTTCCAGAAACCCCTGAACTTGTTGTTGAAAATGCCATGACACCACCTAAATCTGCCAAGACCTGTACGGCAACCATAGATTTTGTTTTGCAATCACCAGGCTTGACTAAAACTACATGCAATAGAGAAGCATCAGAAACAACATCAAGTCCCCACATAGAGCAAGATCTTGGATCACATGAAATCACAGTGGAGGAAAATGGCACACATCCTGAAGAGGAAACCAACAAAGATGTTACAGTATGTTCATCCACCCCAGTCCTACCTCAGGAATGCATCGTTTGCCAAACACAAACAGAATCTGAAAATAAAGAGGAGCTAGAAAATGGAGAAGTGGAAAATTTGTCTGGTAATGAACCAGACTCTGATGCCATTGACGGAAATGTTGATGCATCTAGAGGAGTGGATAAAGAAAACACCAAAGTAACTGATCCTAGAGTGAAGTCTGGAAGGAAAAGTATGCAGAGAAATAGTGGATGGCGAAGGAAAAGCAAAAGATCAAGTCACTGCTTAATATCTCCTGTGAACAAACGACTATCTATCAACAGGACAGTAACCAAATCAAAAACACCTGGAAAGAAGAGCATTATCAAAAGCTCAGTGAAGCTGAAGTTGACGCAGTCTAAACTTATGCCAGAATTGAAGATACATACTGCTGACAAGTGCAGGGACAGTGGATCACCAGATCCTAGCCTGGCAGATGTTAGGGTGCGCCTCTTTGATAACTTAACAAGCGAGAGCAGTTCCTCAGGTGCAAGCTCTGCCACTACCTCTAGCAGTTCCAGCAGTGCTGATGACAAAGTAGAGGCTCCTTCCTCCAGCAGCTGCAGTAGTGTTGAAGACAAAGCAGAAGCTCTAGTGGAGAGGATTATGGAAGAACCTGCAGAGGATGACAGTGAAGAGGTGTTCCATGATTGCAGAGGATCAGAGAATGAAGCTGATGATGAGACAGAAAATGCAAAGTGCACAAAGACAAAcagTGAACATCCACACACTGTGGACAATGCCAATTCACCAAATCCAATTGAATGTGGTACTTACGAGGAATCAGAAGCTGCCCCAGTAGGCATCTCAGAGGAACCTATGACATCATCTCCACAAGAGGCAGTGAATCCATCACAGAAGGCCAGACCAAATAACATTGCCCTGGTCCATTCATTTATCAGGAGGAACACACCCAAGAAAGTTGATCCAGAGgaaaagaaaaagcaacTGCGCATTGCATTgaaggaaaaagaagaaaaggagaaagagagaaGAGAACAACTCGAGATGCAGAAACAGCGAGAAATCGAGGAACGGAAAAGGAGGAGAGAGGAACGCGCCAAAAAGGCGGCCGAACAACGAGAAGCGAAACGCCAGGCGCTGGAAGAGAAAAAGCGCCAGACCCAGGACCAGCGGCAGATCGTTGACGAAAAAGCCAAGAAACTCAAAGAGAAAGAAGACGAAGACAAAAAGAAACAGCGAAACCAGAAAAGAGCTGAAATAGAAGCAAGGAAAAGACAAGAAGAGGCTGCTAGATTACAGAAAAAACGGGAAcaagaggaagaggaaaaacGGCAGCGTGAAATGCTTCAGAAGAAACAAGAGTTAGAAGAACACGAGAGGCAGAGGAAAATTGCTGAGGCTAAACGTCACCAAGAACACAGAGAAAAAGAACTGGAGAAAGAGCGAGAGTTGGAAAAACAAAGGAAGCTGAAGGTGATTGAGGAGAAAGAGAAACGGCTCCGTGAAAAAGAGGAAAAGCTGAGGATTGAACGCGAGAGAAAAGCGCAGGAAGACAAAGAAAGAGAGGAGAGAGAGCGCGCGAGAATAGCGCAACTTATCCGAGAGAAAGAAGAACACGCGCGACGCGAGAGAGAACAGCGCGCCAGAGAGGACAAAGAACGCCAGGACAGGGAGAGAAGGCTGAAAGAAGAACGGGAGGCAGCGGTACGCGAGAAGAAACGACAGGAACAGATGGAACAAGAAAGAAAACGGGTTCTGGAGGAGCGACAGCTAGCCGAAGAAAGCAAAAAGGTTCAGTCAACTACAACCTGCGACTCCTACGAAATGACGCCACCTCCGGTAAGGATACGAAAGCCGGCCTCACAAGAGAACTACAACATTGCTGATCTACAGAGCGACGACTCAACCGACGACGAGGACAATCCGCGAAAGAAGATTCCTTCATGGGCGCGGCCAGCAGCTCTGAAAGCCgccatattccaccaagagtaTTCAAAAATCGACGTTAATAGTATTTTCGATAGTGTTCCTGCCCCggatttggaaaaaattttCACGAAATGCGAAAAGAATAAGCGGTTTCATCAACGCACAAGCTCGGCGATTTGGGACTCGCCTCCCTTGAGGCCCGCCAAGCAAGCAACTTACGTCTAG

Transcript

ENSJVNT00000024144

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O13024	Inner centromere protein A OS=Xenopus laevis OX=8355 GN=incenp-a PE=1 SV=1
Q9NQS7	Inner centromere protein OS=Homo sapiens OX=9606 GN=INCENP PE=1 SV=3
Q9WU62	Inner centromere protein OS=Mus musculus OX=10090 GN=Incenp PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006571 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03941 all species →	INCENP_ARK-bind	Inner centromere protein, ARK binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005635 all species →	Domain	Inner centromere protein, ARK-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13142 all species →	INNER CENTROMERE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:0032133 all species →	Cellular Component	chromosome passenger complex	Interproscan
GO:0051257 all species →	Biological Process	meiotic spindle midzone assembly	Interproscan
GO:0051310 all species →	Biological Process	metaphase chromosome alignment	Interproscan
GO:1990385 all species →	Cellular Component	meiotic spindle midzone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJVNP00000023978.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Echinopora horrida tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Echinopora horrida, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →