Gene detail

Detailed information of ENSJVNP00000033835.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: XP_020609979.1, hypoxia-inducible factor 1-alpha-like [Orbicella faveolata]
Species Echinopora horrida · all data for this species · gene families

Sequence

CDS

ENSJVNT00000034078

ATGAAAGCTAACGGCGGTGTAAACCCGGGTGGAAAAGACAGAAAACGCAAGATTGCCAGCGACCCTGCGCGTGAACCAGAGAGGACAAAAGTGCCACAGAGTGCATCTCGACGCCATAGAGAAAAGATAAATGCAACCTTGGAAGAGTTAGGAGGTCTTCTTCCACTGCCTGAAGAATCCAGATCGAAGCTGGATAAGCTTACAGTACTAAAATTGTCTGTTAGCTTTTTTCAAACTCAAAATTATCTCCAATCTGGGAAGAGAAAGAGAAGAGTGGATGATGCATCTGTGAATGAGATTACGAAACAACTTGAAAAGTGTAACATCAATGTCAGCGATATCTCTTTGGAGGCTTTGGACTCTTTTTTCTTGGTCCTGTCAGAAACAGGAGATGTTTTCTTTGCCTCAGAAAATGTCTACAGATATCTTGGATACACGCAGACATTTTTGATGCACCAGAactttctcagttttgtgcaTCATGATGATGTTGTGGGATTTGAGAGATGTTTGCGGCGGTCTGCAAGAGCAAGGATTATGGAGTTAGATAGTGGACTTGGACTTGACTGTAAAGAATTTGAAGAGCAACCAATTCCTCAAGTGTGTTTCTGTAGCATCAAGTGTCATGCTGGAAGACAGTCGAGCCATGTTAGCCCCTTTTATTACAGGTCATTTAAATTTGATGGCCACATCAAGCCGTTGCTGAACGGTAAGATGAAGCAGTATGGATTATTTGCTCTGTGTACTCCAGTCAATCCTGCCAACCCTTTTACCAGTACTCCTAAAGAGTTACTTCAGGTGTACAGCTGTAAGATGGGTTTGGACCTGAGGATACGCAAGTTGGACAACAGGGGACAAAAGTCTTTGTTCTATAGTGACAAGCAGGCATTTAATTTGTCAGGCTATATGGTTGCTCATCCCGATGACATTCCGTGTTTGATGTTGGCTCATCAACAACTTACTGCTACTGGATTCTGTGAAATAGTATTTCGACTAACAAATGGTCAAGGGGTATATCAGTGGGTGAGAGGAAGGGCGAGAACGCTGTATGACAAAAATGACAAGCCAGAGAGCGTTACCGCTGATAATGTTCTTTTGAACAATGAACAAGGCCCGTACTTTCGAAGGGTTGTGTACGAAATGCTCTGTGAATGGAAGGCTAAGCAGAAAGGTCTTCCGTCTCCAGAGAGTGAAGATGACAGGTCACCAGCCAATGGCACACTGCCTCCAACAGGGGCACCACCAGGATCACCACCAGAAGCAATGCTTCCTACAGGAGCACCACCTAAGCCCGGACCCAGTGGACAGCTTCAACCAGGTAGACCATGTCCACCAAGTGTGCTGCATCAACTAGATGGGCCACAGCCACCAAACAGGCCATGTTCCTCAAGCGAAGTACATCTACCGGAAGGACCACTGCTGCCTGGCAGACTGCTTCCTGCAGGCAGACCACTTGCACCGGGTAGACTAAATTCACCAACTGTAACACTTCCACCATCAGTCATGGAGATTGACGGCATGAGGTTGGCTGTCATGCCTGAAGAAGAAGATTCAAAGGACATTGAGATCATCGAATTCATTAGTCCAAGTGCATCAGTAGACAGTAGTGGCCTTGTGTTGCCATCTTTTGGCCTCGCAGCAGGCTCGTCGGAGTCGTGCATGTTTAGTTCACCTCACTTAAACCGGTCACCGGTGGAGGAGAAGCCGAGCATAGCACAGGATGGAATGATTTACACCCTTAAGACTGAACGAAGGGGTGGCGATGCTACTCGCACCAAATCTAAACCAAATCCGTCCGCATATGAGCAAATTAACCTCATCAAGCAGTTCTTGATGGGCGGAGATCCTAATCCTCCATCAAATGTTCACCAATCTGACAACACCGTTAGAATAAATGGAGGAAGTCTTCATGATATTCCTCCGCTCTTCGCGAATTATCCCGCAGAAACATCGCCAGGCTTGTCAGAAATAAACTTCCAGCAAGATGACAGAGGTTCAGGTCTTTATCCGCCGCAAAATGGGATGCAGTCATCCTTTCACGGGAATGACGGTCGTGTTTCGGGCATGTCAGAAGGTCACGCAAATCTTCCCCAGTATGGTATACCTCAACAACCTGATACGGATAACCTTATATACCCATTTCCGCCAAACATGAACGGTCACTTGAATCCTTCAAACTTCTTTACAAACGGTGTAGGCAGGCAGGACATTCCTGAACTACCCGTAAGTATCGACAGCTTACACAAACCAGTGCAAAATGGTTCGGATTACATTCCTGCCTTCCCCTTCCAAGAGGGAAGCCTTCACCATTCGTTTAAGCCGCCCTACCACACTGGCCAAAATGGATTCAGTCCCGCGGAAAGAGCGGGTGGTTTCTCAAGGGTAGCTGACTGCGCTTCCACCAGTCACCCTGCTCACGATTTTAACGCGAACGCAGGTGTCCCAGGAGTACCAAGGCAAGACACGACTCTGTGGTTTTCATCACCCGACAACGCTCATTTGACTCCGGATGTGGACATTCCTCCGATTGAAGATGTGTTAAGTGTGGACGACCTTACGCCAAGCTTGTGTGTGGAGCATATGGCTCCTTATAGGAATCCTACAAAGTTCCAAAACGGCAACATCATGGAATCCGCGCATACAGGCAATGTGTTTCTTCCTCCGAACGGCATTCACATGAATCAGCCCATGGTTCAGAACATTCAAAAGCAAAGCTATCAGAATACACCCGCCAATGGCAAAAGCGTGGATCCAAAGGGTGGAAACAGCTTGTTGAAAATGATGCTCACCTCATGA

Transcript

ENSJVNT00000034078

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95LD9	Aryl hydrocarbon receptor OS=Delphinapterus leucas OX=9749 GN=AHR PE=2 SV=1
O02747	Aryl hydrocarbon receptor OS=Oryctolagus cuniculus OX=9986 GN=AHR PE=2 SV=1
P35869	Aryl hydrocarbon receptor OS=Homo sapiens OX=9606 GN=AHR PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009664 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08447 all species →	PAS_3	PAS fold	Domain	Interproscan
PF00989 all species →	PAS	PAS fold	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013655 all species →	Domain	PAS fold-3	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050933 all species →	Family	Circadian Clock Transcription Factors	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23042 all species →	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034751 all species →	Cellular Component	aryl hydrocarbon receptor complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJVNP00000033835.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.