Gene detail

Detailed information of ENSJVNP00000035420.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: CAH3172044.1, unnamed protein product [Porites lobata]
Species abbreviation EHORR · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q851C7	Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL4 PE=3 SV=1
Q8LR50	Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL1 PE=2 SV=1
Q8L8B8	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana OX=3702 GN=LOG3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005834 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF03641 all species →	Lysine_decarbox	Possible lysine decarboxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR034201 all species →	Domain	RNPS1, RNA recognition motif	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR031100 all species →	Family	LOG family	Interproscan
IPR005269 all species →	Family	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15481 all species →	RIBONUCLEIC ACID BINDING PROTEIN S1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0061574 all species →	Cellular Component	ASAP complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0009691 all species →	Biological Process	cytokinin biosynthetic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01900	LSC2; succinyl-CoA synthetase beta subunit	EC:6.2.1.4 EC:6.2.1.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.