Gene detail

Detailed information of ENSJVNP00000039481.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: XP_020626278.1, putative methyltransferase NSUN6 isoform X1 [Orbicella faveolata]
Species abbreviation EHORR · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TS68	tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 OS=Mus musculus OX=10090 GN=Nsun6 PE=2 SV=2
Q8TEA1	tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 OS=Homo sapiens OX=9606 GN=NSUN6 PE=1 SV=1
Q84MA1	rRNA (cytosine-C(5))-methyltransferase NOP2C OS=Arabidopsis thaliana OX=3702 GN=NOP2C PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005587 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01189 all species →	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan
PF01472 all species →	PUA	PUA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023267 all species →	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR049560 all species →	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan
IPR001678 all species →	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Interproscan
IPR036974 all species →	Homologous_superfamily	PUA domain superfamily	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR002478 all species →	Domain	PUA domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR018314 all species →	Conserved_site	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22807 all species →	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21971	NSUN6; methyltransferase NSUN6	EC:2.1.1.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.