Gene detail

Detailed information of ENSJVNP00000040040.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: XP_020603438.1, uncharacterized protein LOC110042413 [Orbicella faveolata]
Species Echinopora horrida · all data for this species · gene families

Sequence

CDS

ENSJVNT00000040343

ATGGATGGCTTATATCTTAAAATAACCCAGGATTTTACACCTGACCCCAAGGAAGCAAGGTTCGGTGGCAAAGATTCGCCGATGGCTGTAGAAAAGGGCGATATTATTTTTGACGTTCGAAAACGCGGGGACGGATGGATGTATGGCAAGAATTTAAACAGTGGAAAGGTTGGAAAATTTCCTGAGAGTTGCGCGGCGAAACTGACTGGAAATAACAAGATCGGGAGCGGCTCgggaagtccagattctgacaAGAAAGACGAGAAAAAAGATGACAGAAAACCCGCCGCAAATAACGAATTGGGCAAGGAGAAGCCCGCGCGGCTTCAGAATCGAACTAATAGTACGCCCATTACGAAGAAAGCGCCGCTTTACCCCAAACCTTTTGCCGGAAATATGAGGCAACCgcaagaaaaagagaaagaggaAAGGAAAGAAACGTCGGGCGACTCAGGAGTTGTAGAAGATTCTCCTGATGGAAATTACTGCAATGATGATGAAAAGCCAACGAACCGAGACGCTTCGAAAACCGGAAATACTGTCAAGGATAATAAACAGGAGCCAAAGATTGGACTGAGATCTCTTCAGACAGTTCACAAACAGAAACCAGAAGCTAAGGCGGCTGAAACCGATCGAGTTAAGGCGATTGGAAGGCCTTTCAAATTGAACTTAGGCAAGAGTAGTGAAGGTTCAAAGCCGAGTGAACCCAGAGCTGTGCCACGTTTGAATACAACGGCAGCAAGAGACACTCCGCGATCACTGCAGCCCACGCCACGGGAAGATTTGAACGAAGACCAAAACTACGAACCGGTCGAAAAGAGCCAGGAGAAAAAACCTCAGGCTAAAGAAACGTCTAAACCTGTTCAACCGAAAGAAGAACTCAAAGCTGCTGATATCAAGGCGGCTAAAATTAATCCGATAGGCAAGCAAAAGAAAGTTGACGAGAAAACTCAATCAAACGTGACCAACAGGAGCTCTGCTGGGGGCGCTGGAGTTAATATTCAAGAAAACCCTTTGTCGAAGGACGAAAGTAGTATTTATCAAGTACCCGGTGTTGTTCCTCCTAAACCAGCCCGATCAAACGTTCCTGGGTGTACAGAGTGTAACGAACCTCACTTCTACGACACACCAATGCATTACAAGACTCCACCGTCATCGCCGTCGACAGAGAAGCGAGATAACTATGAGCCGACAATCGAGAAACCGAAAGAAGAGAAATATGAAAGAAAAGGCGGCTCAACAAGTCTGAAGCCGACATCATCGGTGATCAGGAAAACGAAAGAGCAGATGAAGCATAGAATGGCTTCGTACGAGAGCATAGAGGCTGAAGGAAGACGCTCTACAGAGAATATCAAAGATGCGGTGCGCGCGGTGAATGAAACCAATGAGAAGTTACTCGCGCCGAACAGGCGGCCAAAGATACGAATTTTAATGGGCATGCTTTTAGGATTATTGCTGGGTGTGTTCATATTTTTGACGCTATACCTCTTGGCTCATTTGCACATTGTCGTTTGTGTCGTTTCCGCTCTGTTGATTGGTTTTATTGTGGCTACAATCTTCGGTTTTCTGGACAGGACGCGTCTTCAGTGCATCGCGTTGCTTGTCTTTCCAAGCTTGTTTGGCTGTGGCGGAAAAATTTCATTCTGGTTGCTGATCACGTTTTTTATCGTTTCTGGTCCAGGGTGCAATTTCATTGACAATGTACGCATCGTCACGCAAAGCAGGGCCTGCCTAATGGAAACGCACAACTTAGGAGATAATCGTAGTTCTAATTTGTCGGATTTTGTTTTTCTGGATGGAAACAACCGAGCCGTTGTCCAGCGTGTACATAAGTATGAGAACATTACGCAGGCGGCGAGGAATTACATTGAAACTGCTTTGCTGTCATCATCTGATCGCCAAGATAACGCGTTTAAAAGCAATAATTCATCTGAGGTCATTTGCATGAGTTATCTCCGTCGCGCATACAACATCTGCTCGAGTGAAGTGGACACCGACTGTGTACGACTAAAGTCTTTGAAATGCGAATTCCTGACTCCGAAGAACGCGTGCGATCACCTCTCCGACGCTCAAATCCAAGAAACGTGTGAATACATAAACAGCGCGAAAAATCACACGCTTTGGCAAATTAAGAAAATTTTGGAACAAAGCCCTGAACGATTGAGAACAAAAGACGTGCCTCCAGACAGTGACCATAATACTATCATGGCTGGAGAGCCATGTGAATTTGTCAAGATTATCGTAATGCTGCTGCCTTTGCTAGCGTTCCTCGTATTGTACGAAGCATACAGGTATCACAAACTCTACTTGTCCTGGAACGAATTTGACAATCATTTTCTCACGCTTCGCTTCAAGGCGATTGAGGACATGCGCAAGGCGAGCGGAGCCGCTGATCTGTTGGTACCTTTGAAGAAGGCTGAGCTTCAGAAATTCGTTCAACCAACTGCCTGCCAACTGGCCGAGTCTGAGAAGCGAAGCATGCTGAAATATCTGCTGTTTTACTTCATTTACTTGATGTTTGCACTGATGGTCATCCTCTTGGATCATTTCTTCTATGTTGTGATCACTGCCGATAAGGAAGTGCAGGCCAATATTTCCAAGAGGTGTAATGGAGATCTGAAGAGGTTGAAGATGATGTATGTTATAATCCTATCAACCCTCCTTGGAATCTTGCTGTTGATTATCCTGCTCCAGGCTTTCCTCCTTCGCTTACGCCGCTTGATCTCCTCGCGTTTCTATCCAAGGAGAGAGAGAAAACGTATCGCTTACCTTTACTACAAACTTCTTGAAGAACGTAAAACATTTTACAAGTCAGTCATTGAGAGTATGAATAACTTCTCCGAAGAAACTGAGATGCTCAATAGACTGGACGCAGTGTTGGTTCTTTGTAATACCTTCAGCTGGGTCAAAGCCGTGTTTGAGTTTGTTGGCATCGACATCCGCCGATGTGCTGTGTGTGGAACAGGGCTTAACAAAAAGTACCTTTACTGTGACACGGAGGACTGCGATGAAGTAGCccttgtaaatttattttctcgtttCGGTAAAGTTTTCGTCTGGAACGCAGACGATGCGCTTAAAATACGTTCAAAATATCGCATAGTCGGCTCTTTGATCGGTTCGTTGCCCAGTAGACCGAAGCAAAACCACTGTTTCTCCTTGCCGCTTCTCCTTTCGCAAGATGAAGCCACGCTGTTGCTTCAAAAAGGACTGGCAAGAATCTGTAATACGCCGAAGAGTTTCCCTGCTCCGTCAGAGGAGGAAGTTGAAACGTTTAATGAACTACGTCGCGATAGTGTTGTTAAGCAAATTGAATTGTTTCAAAGAGGACGGGAAGAAAAACGACTGGAATTAGCGAAAGTCATCGAGGAAGGAAGGCGAAGAAAACGAGGAAAACGAAAGCGCAAAAAAGATGATAATGCAGGACAAGAATTTCTCGCTGCCAAAAAACTGAAAAGCGAAGAAGTAAGCAATACAGGGGCTGAAGATTGCATGGAGGAGCAAGAGTTTGCTCAGTTGAATGTAATATGCGATGAAGGCAGCATTGACACGGAAAGAGATCAGGATACATGCAGCAGAGTTGAAGTTATGGAATATTACTCAGATTATAGAGAACAGGAAACCAAAGATAGGCCTGAAGATAAAAGTGATATGCTAAATGTTTCAATTAAATCGGATATTAATTGTGAAGAAACAAAGTCTCTTTCAGAACTGGGAACTTTAATTCACATTCCAACTGTAATGCCACAAAGACTCCAATCATCTCCTTCTATGGATTGGACATACCCTCAAACAGACAGTGAAAAGATACATTATCGTGTATTTTTAGACCTCTGGGAGAAAGGTTATTATTTAACAACTGGTGCCAAATTTGGAGGTGATCTACTTGCCTATCCAGGAGACCCCATGAGGTATCATTCATTTTACATTGTTATAATAATCCCTTGGGGAAAGAAAGTCACACCATTTGAGATAATCTCAGCTGGAAGGCTGGGTGCTACTGTCAAGAAAACAGCTCTTCTTTGCTCAGTTAGTGACTCTGATGAAGTTGTGTACACATCTGTGAAGTGGAGTGGAATAAGCTAA

Transcript

ENSJVNT00000040343

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BMZ5	tRNA-splicing endonuclease subunit Sen34 OS=Mus musculus OX=10090 GN=Tsen34 PE=2 SV=2
Q9BSV6	tRNA-splicing endonuclease subunit Sen34 OS=Homo sapiens OX=9606 GN=TSEN34 PE=1 SV=1
P39707	tRNA-splicing endonuclease subunit SEN34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SEN34 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009043 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01974 all species →	tRNA_int_endo	tRNA intron endonuclease, catalytic C-terminal domain	Domain	Interproscan
PF07782 all species →	DC_STAMP	DC-STAMP-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR006677 all species →	Domain	tRNA intron endonuclease, catalytic domain-like	Interproscan
IPR011856 all species →	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR012858 all species →	Domain	Dendritic cell-specific transmembrane protein-like	Interproscan
IPR036167 all species →	Homologous_superfamily	tRNA intron endonuclease, catalytic domain-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13070 all species →	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000213 all species →	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0000379 all species →	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13803	TRPL; transient-receptor-potential-like protein	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.