Detailed information of ENSJVNP00000041206.1 in Echinopora horrida

Genomic Location: chr8:31574387...31593760
NR annotation: XP_022796382.1, uncharacterized protein LOC111334822 [Stylophora pistillata]
Species Echinopora horrida · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q24439ATP synthase subunit O, mitochondrial OS=Drosophila melanogaster OX=7227 GN=ATPsynO PE=2 SV=2
B1MT69ATP synthase peripheral stalk subunit OSCP, mitochondrial OS=Plecturocebus moloch OX=9523 GN=ATP5PO PE=3 SV=1
B0VXH3ATP synthase peripheral stalk subunit OSCP, mitochondrial OS=Callithrix jacchus OX=9483 GN=ATP5PO PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006974 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15749
all species →		MRNIPMRN-interacting proteinFamilyInterproscan
PF00213
all species →		OSCPATP synthase delta (OSCP) subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049472
all species →		DomainMRN complex-interacting protein, N-terminal domainInterproscan
IPR026015
all species →		Homologous_superfamilyF1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyInterproscan
IPR020781
all species →		Conserved_siteATPase, OSCP/delta subunit, conserved siteInterproscan
IPR000711
all species →		FamilyATPase, OSCP/delta subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11910
all species →		ATP SYNTHASE DELTA CHAINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015986
all species →		Biological Processproton motive force-driven ATP synthesisInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0046933
all species →		Molecular Functionproton-transporting ATP synthase activity, rotational mechanismInterproscan
GO:0000274
all species →		Cellular Componentobsolete mitochondrial proton-transporting ATP synthase, stator stalkInterproscan
GO:0042776
all species →		Biological Processproton motive force-driven mitochondrial ATP synthesisInterproscan
GO:0045261
all species →		Cellular Componentproton-transporting ATP synthase complex, catalytic core F(1)Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSJVNP00000041206.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Echinopora horrida tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Echinopora horrida, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP