Gene detail

Detailed information of ENSJVNP00000042804.1 in Echinopora horrida

Genomic Location: not available for this species
NR annotation: KAJ7383932.1, listerin E3 ubiquitin protein ligase 1 [Desmophyllum pertusum]
Species Echinopora horrida · all data for this species · gene families

Sequence

CDS

ENSJVNT00000043157

ATGGGAGGAAAAGATAAACAAAGAACTAAAGGAAACGTTAAGCCATCCAGTAGTGGACGTGCTGCAGCGCTGATTTCCAAGGATGGTACAGTGGGCTTTGTTGGTTTTGGAGGCCTGCAGGGAAGTCCAGGGGCAAGTAACCTTGGCTATGTTCCAATGGCTGCTGGTGTCAGTGAGGATGTTGATGCTTGTGTTGATGCTGAATTCAGGATGGTGATGAGGAAACTCATGAAGAGAGACTCGgttacaaaattgaaagCAGTACAAGAGTTCACTGACTTATGTAAGAATTCAACTGTTGATGCTGTGGAAAGTGCACTCCCATTTTGGCCAAGACTATTCAACAAACTGGCTATGGATGTTGATCACAGGGTGCGAGAAGCCACTCAACAAGCCATGGAACAGCTGGTTCTAAGAATTGGTCGTAATCTTGCACCACACCTACGTTATGTGATCGGTCCTTGGTTGTGTGCACAGTATGATACCTACGCTGTAGTAGCCTCCTCAGGAAGGAAATCATTCCAGGCTGCATTCTCAGAAGAAAAACAAGCAGGGGTCATCAAGTTTTGCAGAAAGGAGTTGTTTGAGTTCTTGCAGGACAATATACTAACACAAACATCTTCGACTCTCTCCGATCCAAAATTTGTTTCTGAAGAGGAGAGAGAGGCCAAGTATAATCGAGTGCTTTCATCCTCCATCTTGGCTCTTGGTCACCTTATACATGTGACATCATCAGACAAGGAAGGTGCTGATATGGAAGAGCTTTATCTCAATGTACTACGACAGAACAAGTTTTGGAAATACACGAGACACAAATCTCCTAATGTGCGAGCTGCAGTATTTTCTACAGTTAGCATTGCATGCGGGTCACTTCCCTCTACGATGTTATCTCTTAGCTCCCAAGTTTCTCCAGCTGTGTTATCGTCACTGGATGATTCTGATCCTGCAGTGTGTCAGCAGCTTTGGAATGCTGTTTTATCTGTCTTAAAGAATATCACAGACTGTTGGAAGCAAGTTAATGTCCGCAAAGCTGTTTTGCCAAAGTTGTGGTCCATCTTAAAAAATGGTGGCAGTGGCTGCGCTACAGTCATCTTTCCTAGCCTGCTGCCTTTCCTAAGCAAAGTGCCTTCAGAGGTTATTGGCAGCGATGTGGGTTTCTACAAAGAATTCTTTACTAGTCTACAAGAGGGTTTGATGAAGGAGCGTGTGCAGAACAGCCCAAGTGAATGTTCAGCAGTAACTGGGGCATTTATGGAGTGTCTAAGGTTTTGCCTTCTCTGTGGGTTTGATGGTGACAGGCCAGATCTGACAGTACAAGAATACTTGATCAAAGAACAGCTGCTGTCAGTGTTGAAATCATCTCTGGAGAAACAAAGCAAGCTGTCACAGTTCAATCTTTATCCTCTTTTGGCTAACCTGCTGTCTTATCTGTCAGGCAAATCAGAAACTGATTCTAAGTTAGAGGAAGTAGAAGAGGAACAGAAAACCCAGCAACCATACCACCACATGTTAGAATGGTTCTGGGAGGGATTAAGTTCTGTGTGCTCGGAAAATCTCCAATCAGTTGTTGGAAATGTTACTGATGAAGTTGTCAACTATGTGTCACATTGTTTGGTTACTCTTAAATTCCCgtccaagaagaagaaaaagcaaCTCAAAGTTGTATTTATGGAGCCATCATCAGAATCATTTGATAACGATTCATCTGAGACTGAAAAACGCTGCTCTTCGAGAGAGTCCTTCACAGGGTCTGTTGATGTGGAAAGTCTTTACAATGGTTGTCTTTTGGACTTGGTTTGTAACACTTGTTCTCTGTGCCTGGATGaaatatctcaaaataattcACTGCTGCATTTGAAGCTTCTCTCGGGCCTTGTTCCTCATTTTACATCAACAAAACtcataaaaacgtttttaaaaagGACGACTAGTGAACATTCTTCAATTTGTTCAGTGCTGGACAATAATAATTACTGTGAATTAAGTGAACAATTTCTTAATCATACCTTATTCCCTTGGATCAAGTCATCTCTTGAAAGCGTTCTTTCTGGTGGAAACATTGGTCACGATATTGGTGTTTTCGCTGATAGCAAATCTGTAGATTACCTCATTGCTATTTTCTGCGGCATTGTTAGAACGTTACCATTTGTGCAACAGGTGGAGCGAGTATCACAATCCCTCCAGGGACTCCATTCCGAGGTGCTTGGGGTGGTCAAATGGCTTCAGAGCGAAGAAGGAAGTGAAAGACTCCTTGAGTTGTCAAGATGTTTGGTCCTTCACGTTGGACAAGATGCAGCTCTTTGTGAAGAAGATAGAAAGACTGTTTGGGAAATTCTCAAGTTGTGTATTGTTACCGAACGACACGTATTTAgggcctgttttttttttccaggtaCTGTGACACAGTCGTTAACAGAAACGTGGCAAACTGGATTAAGAGTGTTCAGGCCGTTGCCCTCTGAAATGGACTCTACCCCTTGTCAAACACTTCTTCTTAAAATAGCTGTGCTTGTTCAGGAGAGGCTGGAGAAAGTCGAAACGCTCCAAAGGTGTCTGAAGACCTTACTGTCTGTAAACTCGGACGGAAGGAGACCAGTtCAATGGCTGTTGGATCCGCTTACAGATGGAAAGCTGCCAATCATGTCAGACTTTCAAGATCACCTCGGCGAATGTGACAATGTACGGTCCACCCTTACGAATCATCACAAAATGATGGTGTTCTCGTCGAGTCTGCTCAAAGAGATCCTCTCAGATGCCAATGAATCGACGCCAGGCTTGAAGAGTGACATTGTAACAAGAGATTCCATTGTCCGACTTTTGTTGGAGGCGAGTTGGGTTCGACATTGGTGCATCTGTGTTTTGGGATGCAGCGGCAACACAGAGAAATTTAGTTCGTTACTCACCATCTCCAATCTTTTGGTAAAACTCCAGCAAACTACTCAACATCTGATAGAGCACGTTAAGGAGAAGCAGTGGAGTGAAGCGCTCCTCGCTGATGCACTCACTCGGTCAAGGAGTGAAGGATTCCTGTGGTGCGTTGTGCTTGGAGGCGTCTTAAAAGACCTGCACCGACTGGGCTTGCCATATGAACCCACTGTTCTGTTAGCGGAGGTTCAATTTTTAGCCAGTATAGAAGAAAAGGAATGTCAGACTTTCAATACGTTGATATCTCACGTGAACGGTATCTATGAATTGAAAGTCATTACTGAGCAGTACACTAGATTATTACGATTTGCCCGCGTGCTTGCTGTCATTGGTGGTTCTCTTCACCAGTGGTTTAAACGAACCGAAGGCGTTGAAGAAGCACTGCTCGAGTACCAGCTAACGCTAACAGAGATTCTGGACGAGCTGGTGGAGTGGAACAAGACACACGACAACCTTTTGCTTATCAACAGCCCTTTGCATGACGCCTCCATGAGCGTGTTGAGTCTGAACTTATCCCTCAACAGGATTCTTGAGATGGCTGTTCTTCACTGCTCTGACAAGATGAACAGTAAGCACTGGGATTTTATGCTGTGTAGTTTGGCCGGCTGGCTCCAgAGCTGTGAGGAAAATCACCCAATCCTAACTACGTCGTTGAAAAGTGTTGCTCTCTGTTGCCAAGTGTGTTCACTTTTTGGCATCGTAGCGTGGTTCTTTCAAGAGAATGCGTCAAAACTCTCCAAAATCAGCGACGGTGGAAACTCCAGTGAGGCATCACATGAAGTAGAGAGCGAATCTTCAGCGACCGCCGACAATGCAGTGTTACCGCCAAATCTAATGGCTGAATGGCAGGAGTTCTTCAGTGGCTCTCTATTCAATACAGTGTTGCGGTTGTTCATGTTCCATGCAGGTGAGGGGCGAGTAGGAAGCTCGAATTTTGAAGTCCCATTTTGGTCGACCCGTATCGGTGAGTCACTTGGTAAAGCTGTGATCTACACTCCAACGTCCCTTTTAAAGGAGCATAATTTCGAAGGGCCACCACCAACTTCCGCTGAAGAATCGTCAAATATGCCCCAGTGGATCGGTAACCTCCTGGAGAAGTGTTTGCCTCTTCTAAATTGCAGTCTCCATGATCTTCAATTTGCTGGCTATCATCTACTTTCCAAAATACTCATTGATCACTGTTATTTGCTCAGATCCCCACCCTCTCCACTGATAGTGCTGATAAATGATGCGTGCACACGTATGGCGGAGATGGTGAGTGAAGCGCATGTCCCGTTTGGAGAACACCTGGACATGACAAGCGACACCGGGGCGCAGAACACCAGCCTCGCTCTGATGTTAGCCTGGAAACTGATGCTTCAGTTCTTTAGAAGCTTGCCTCAAGAAAGGCGAGTTGAATACGCCAAGTTCATCCGACAAAACAAGATGGTGGGCGATCTTCTTGGCGTATTGTTTCGACTGATTCCGCTCAAAGCAACAGCGGTGGCGGCGACAGGTGACTTTGAGCCAGAGATCGGACGTTTTGCTGGTCAGCGTACTATTCAGCAGTTAGCATGCGGTGTGTACTATTCCCTGTCGCAGTGGATGCCAGCCATTGTCAGACAGTGGTGGAATGGTTTGGATAAGCGTCAATCTGGTATTGTGGACAAGTTCACGATTTGCAGTATTACGCCTCAGCTGTGCCAGCGAGAAATACAACTGGTTCAAATCCGGTTTGACAACATGCAAGTCAAGACTCGGCCCAGTGCCCGAGAGGTGGCTGCGGTGTACACGGTTGAGGAGATCTCCATGGAGCTGGTGGTGAAACTGGCCCCCAACCATCCGCTGGGGGTGGTCTCAGTGGAGAGCGGTAAGAAGATCGGGGTGACAGCAGCACAGTGGAGGAGCTGGATGCTACAGATGACAACATTCCTCACACATCAGAATGGAAGCATAATGGATGGCCTTATTCTGTGGAAGCGAAACGTAGACAAGCGTTTTGAGGGCGTAGAAGACTGTATGATATGTTTCTCAGTCATTCATGGCAGTAACTACTCTCTGCCTAAATTGAGCTGCAAGACTTGTAAAAAGAAATTCCATTCCGcctgtttgtacaagtggttTAGTACCAGCAACAATGCCACGTGTCCACTGTGCCGAAATCTCTTTTAA

Transcript

ENSJVNT00000043157

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1C231	E3 ubiquitin-protein ligase listerin OS=Gallus gallus OX=9031 GN=LTN1 PE=3 SV=1
O94822	E3 ubiquitin-protein ligase listerin OS=Homo sapiens OX=9606 GN=LTN1 PE=1 SV=6
Q6A009	E3 ubiquitin-protein ligase listerin OS=Mus musculus OX=10090 GN=Ltn1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003807 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039804 all species →	Domain	Listerin, zinc finger, RING-type	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011016 all species →	Domain	Zinc finger, RING-CH-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039795 all species →	Family	E3 ubiquitin-protein ligase listerin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12389 all species →	ZINC FINGER PROTEIN 294	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043023 all species →	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344 all species →	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112 all species →	Cellular Component	RQC complex	Interproscan
GO:1990116 all species →	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22377	LTN1; E3 ubiquitin-protein ligase listerin	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.