Gene detail

Detailed information of ENSPYFP00000001477.1 in Pteroeides griseum

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Sequence

CDS

Transcript

ENSPYFT00000001604

TGGCCGCACGCGCGAGAAGACATTCGCATGTTTAGAggacattttcttttattctgATGCTGAAAAGAGTTGGAAAACGTTGTTTTGACCGAAGAGGACCTGAATGAGTcttatttttatgatgaaagtgGCAAGGAACAAAAAAAAAGGTCGATAAAGACGAGTAACTTGGTCGGCCGTCGAGCGGACAACATGCAAATTTGATCGGCAAATGTTATCTCCGTAAAAAGTTCATGTAATAATTGCAACACCTGGTAGGATCTGTGATCTCATGAAAAAGGAGCTGGCAAATACAAAAGATTGCCAAATGGTTATAATGGATGAAGCAGACAAACTCCTGTCACTAGATTTTAAAGGAGTCTTAGAACAAATAATCTCCTACCTACCAGACTCACGACAGATTCTTTTATATTCAGCTACGTTTCCTGTTACTGTAAAAGAATTTAAGGAGTCATATTTGGAAAAACCTTATGAGATTAATTTAATGGATGAACTTACATTGAAAGGAATAACCCAGTATTATGCATTTGTcgaagaaaaacaaaaagtcCACTGCCTGAACACATTGTTCTCAAAGTTACAAATCAACCAGTCAATCATCTTTTGTAACTCAGTCCAAAGAGTTGAACTGTTAGCAAGACGAATTACCGAGCTTGGGTACTCGTGCTTTTTCATACATTCAAAGATGACTCAGCCTCATCGTAATAGAGTTTTCCATGACTTTCGTAAAGGAGAATGTAGAAACTTGGTTTGCTCAGATCTGTTCACTCGTGGAATTGATATCCAGTCAGTCAATGTTGTCATCAACTTTGATTTTCCTCAGTTGGCCGAGACATACTTGCACCGAATTGGTCGATCTGGTCGCTATGGTCATTTGGGTCTGGCTGTCAATTTGATAACGTATGATGATCGTTACGATCTTTTTAAAATTGAACAACAACTTGGCACTGATATCAAGGCTATTCCATCAAACATTGACAAAAGTTTATATGTGGCTGAATATCATCAAATTCAAGACGACAATTAATAGTATCCTTTTTGTTCATTCAACATGatcttgtattttgtaaattacTTTAAGTAATTCTCTGATTAGATAGAGTGTACATATTGAATATGTGGTTGTGTTTGTTACACGATTCAATTAGAGTGTAAATAACACAATCTGCTCTGGGTCGCTATGAATATAATACATACCTAAAATTGTATGTACAGTGCAAACTTCGTCACAAATGTAACATGTAATATTTTTGTGATATGTTTCCCTAGGAATACTCCATTTTTCGTTTGGGTGTTTTACTTATTTCCTATTTCACATTTTACTTCCATCAATACCAAACCATGTGTTCTAGATTAAAAGGGCTTTAGTAAGTTCCCGAAGTTTGTGCGTTACTTATAGAATCCCAGCTGTACAGTATGTAAGATAGTTCATTCAACGCAAATTAACCAAAATATGTTGtccataaaattatttaaattacccACATTGTAATCTAAAGTATTCTGATATGTGGTGGACATGTGGTGGGCTTTGTCATCGGCAATGACTTTCCCATGATATCACTTGAGCTACCAATTGATTTAAACCTGCAAGAGCCTTCTATAAAAAAACGTTGGACAAATCATCAATAATGACGTGATACGGGAGTTATTTTGCCGATGATACAGCTCCACCTTGAAAGTGGTAACTCTCAAACAAAAATTGAATTTGTGTGTACCACTTTTAGAATGTTTAGTACTGACGCTATACACGTTCAAACATTgtaaataatgtaaaaatataCAGAGATTTATTTTCTATAATGATGGGGGAGGGAGGGGGGCGGGCGGGTGATAGGCAAGGTCGCATGGCGACATCAAACCTGATTGAATGTCCCAAGATGATTTAAGGATAGGtttaacaacaacaatttcGCAAACATGACCGTCGTATATCGATACAACGACGCACTTAATTGTGTTTAAATAATTGTAGTTATAGTAACCGGTTTAAAATGAGCTTTCATAGCATCTcaaatcaaatata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47960 all species →	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan
GO:0034063 all species →	Biological Process	stress granule assembly	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSPYFP00000001477.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.