Species Overview — Pteroeides griseum

CnidoSite currently holds 7 of the 15 data types it covers for Pteroeides griseum. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Gene annotation

✓ 36,725 records

Predicted gene models with CDS / transcript / protein sequences

Functional annotation

✓ available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Gene family (orthogroup)

✓ available

OrthoFinder orthogroups and TF / ubiquitin families

Bulk transcriptome

✓ 2 records

RNA-seq samples with expression values (TPM)

Co-expression network

— not available

Positive / negative co-expression edges

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Proteome

— not available

Mass-spectrometry proteomics samples

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Metagenome

— not available

Host-associated metagenomic samples

Phenotype

✓ 90 records

Trait measurements with geo-referencing

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Mitogenome

— not available

Mitochondrial genome record and gene annotations

Transposable elements

— not available

Repeat annotation of assembled genomes

Genome browser

✓ available

Interactive JBrowse track for the assembly

Assembly record

Assembly

Assembly name
jaPteGris1.1
Assembly level
Chromosome
Assembly accession
GCA_964659595.1
Assembled by
Genoscope CEA
Year
2025

Genome statistics

Genome size
455.68 Mb
GC content
35.5%
Scaffolds
36
Scaffold N50
20.13 Mb
Contigs
309
Contig N50
3.34 Mb
Chromosomes
20

Annotation

BUSCO
Complete, single-copy 93.5%Complete, duplicated 1.0%Fragmented 2.4%Missing 3.1%

Identifiers

WGS accession
CBAADO01
BioProject
PRJEB83410

Other Octocorallia species

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 16:58). If a data type is listed as unavailable for Pteroeides griseum, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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