Species Overview — Dichotella gemmacea

CnidoSite currently holds 4 of the 15 data types it covers for Dichotella gemmacea. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

— not available

Predicted gene models with CDS / transcript / protein sequences

Open Gene models anyway →

Functional annotation

— not available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function anyway →

Gene family (orthogroup)

— not available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family anyway →

Bulk transcriptome

✓ 1 record

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

✓ 94 records

Trait measurements with geo-referencing

Open Phenotype →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

✓ 20 records

Mitochondrial genome record and gene annotations

Open Mitogenome →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

— not available

Interactive JBrowse track for the assembly

Open JBrowse anyway →

Assembly record

Assembly

Assembly name
ASM4404851v1
Assembly level
Contig
Assembly accession
GCA_044048515.1
Assembled by
UCSD
Year
2024

Genome statistics

Genome size
524.50 Mb
GC content
38.5%
Scaffolds
8,193
Scaffold N50
195.9 kb
Contigs
8,193
Contig N50
195.9 kb

Annotation

BUSCO
Complete 87.5%Not complete 12.5%

Identifiers

WGS accession
JBBWUD01
BioProject
PRJNA1092117

Reference

Reference
A widespread metabolic gene cluster family in metazoans Nature Chemical Biology [link]

Other Octocorallia species

Trachythela sp. YZ-2020Eunicella cavoliniEunicella verrucosaAntillogorgia americanaLeptogorgia sarmentosaDendronephthya giganteaMuricea muricataParamuricea clavataXenia sp. Carnegie-2017Chrysogorgia sp. JL179-B06Hemicorallium imperialeParagorgia papillataHeliopora coeruleaPteroeides griseumCallogorgia gracilisBriareum asbestinumCavernularia obesaCorallium rubrumDichotella gemmaceaErythropodium caribaeorumEunicea clavigeraEunicea knightiGorgonia ventalinaNanipora kamuraiParacalyptrophora sp. SY255-jinParamuricea biscayaPhenganax marumiPhenganax stokvisiPhenganax subtilisPteroeides caledonicumPterogorgia guadalupensisRenilla koellikeriRenilla reniformisStylatula elongataVeretillum cynomoriumVirgularia gustavianaEunicea succineaMuricea laxaSarcophyton elegans
See all Octocorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 14:55). If a data type is listed as unavailable for Dichotella gemmacea, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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