Gene detail

Detailed information of ENSPYFP00000001765.1 in Pteroeides griseum

Genomic Location: chr1:50359096...50375668
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSPYFT00000001920

AGGcagttaaaaaatTCGGTTGAAAACTTTCCAGACCAAATAGCTACTATATTTTCCGGTAATGATGTACAGTCAATCAGTTATTACGATTTGGGCCAAACAGTTAAAAATTTAAGcactttttttaaaaacgttttcttaAACAATGAAGTTGTTGCTATATATTCTGTCCAAAATCTCCATTTGCCTACTGTATTATTGGCCATTCTTAATTCATCTGCTGCATTTTATCCCATGTCAACTTCTTTTCCGCCTCAAATTATCCTAAATAATTTGGAAAGACAttctatacattatgttttggTGGATAACACTCTGGTTGAAGAATTGATAGTTCCAGAAAATCAAGAAGTATGTGAGTTATTCAATAAAATACAAATTACACTGATGAAGATGTTGCATAGTAAAAAAAACGTAGTGGAATGGAAAGAGAGACTTGCCTATGTGATGCAGACCTCTGGAACAACGGGCGAACCTAAAGCAGTGTTTGTTCCACATTCATGTATATTACCAAACATTACTGACTCAATTTTTGAAGTTACTCATCAAGATATTGTCTTTCTTGCATCGCCTTATACCTTTGACCCTTTTGTTGTTCAAATGTTTCTTGCACTGTCTAATGGAGGTTCTCTGTTGATTGTGCCTGAAAGTGACAAACTCTTACCTACATCCTTATGCTCAAAGCTGTTTGGTCAGCATAAGGTTTCTATTTTTCAGcCTACGCCGTCATTGTTGTATTACATTGGAGAAGATTTGATTAGGAGGACAATCTTATCGGAAAAATCCACCTTGTCGGTTCTTGCTATGGGAGGGGAGCCATGCCCACTGCTTACAACATTGAGAAAATGGAAACACCCGAAATGCAAGACAAGACTTTACAATATTTATGGTATCACTGAGGTATCCAGTTGGGCTACTTGTTACCATATTACTGATAACGATCTTGATAAAACAACCAGTGATGGGAAATTAAGCACTTTAAACTATTCTCTTCTTGGCGGAGATGATCGTAAATGTCTGTTGGAAGGAGAATGTCCTGATTCTATACCATCAATGAGAGACAGTGGTGATATTGTCGAAGTAAAAAATGGTGAAATGCGTCATCTTGGCCGGTCTGATAACCAAATAAAACGGTTTGGTTGCCGCGTCAACCTAGAGTATATCGAGAAAGTTGTTCTTCTTGTAGATGAACTACAGTCTTGTGCTGTAGTTATTCAACCAACCTCCCTCGGTGGTGGACTAATACACTTGTTCATTACTTTGAATGTGACCCGGTGTGAAAAAACGTTCAAGGAAAAGTTAAAAACCCACCTGATGCAAGTGCTACCCCGAGCAGCGCAACCTGACGCGATTCACGTAATTTTTAAATTACCATTGACTAATCATGGTAAGACAAAcaaacaagaacttttaaaatacttAGATAGCCATTCATCCCAAGATCTCGACTTGAATATCGTCGATGCACTTACACGAATATATCACAAACGAAAGCTGGATGAGGCGAATGTTTTTGCAATAAATCCCCCGAAGCCCCAGGATATGTTTGTTTTACAAGGAGGTGATTCATTTCTAGCAGTACGTTTGGCCGATGCGATTGAACGCTGGGCTCGGGAACGCTACGGAACATTTTTTGATCCGTCTTCGTTGGTCGAATTGGTTATTAACAGGACATTTGAGGAACTTGTGAGATATGTTAAAAATTCCGCGCGTGGAAGCTCTGATATCCATGATCCTTACGTGGGCCAAAGTACCATTTCGCGGACATCAAAGACAATTCCAAAAAAAATTTTGTTCTCATCGcccaaaaaattgaaaaaagatAACATTTCATCTGCGTCACTGAGGAAGTGCATAGATGCCTCACCTTTAGTTGTTGTTAGTTCTTGTTGTCTTGCACATGGCGAAGTATTTATTGGTTCGCATTCGCATCTTTTTATGGCTGTGTCACTTTCAACTGGTGATCTTAAATGGAAGGTGTGTTTGGGTGGACGTGTGGAATCGTCCAGTTGTTTGTCATTGTGTGCTCAACTTATTGTTGTTGGATGTTACGACGGCAAAGTATACGTCTTGGCGAGAAGTGACGGTGCAGTTGTTTGGACATACCAAACAGGAAATGCTGTGAAGTCTTCACCATGTCTTGATCATAACAGTGGACTTATTTGGGTGGGATCACATGATGGTGTTTTATATGCACTTAACGTCATACATCGATCGTGCCAAATTCAAGTGAACTGCCTTGGTGGATCTTGCTTCAACTCACCAGCAATCTGTTCCCAGCCCAGTCGAGCTTACATTGGCACGCTAGCCGGTCGTTTTTTGTCCGTCAATGCAGTCACAGGGGACGTTATGTGGTGCAAAAAATTCAACAAACCGATCTTTGCTTCACCGTTGGTATACGACAGTAATGTTTATGTAGCCACAGTGGATGGTTGCTTGAAATGTTTGAATCATGATGGAGATTGCTTGTGGGAATGTTCTACTGTCGGTGAAATATTTTCTTCACCAGTTTTGAGCTTGCAAGGCAAAGGATCAGAAATAAAGGTTATCGTTGGTTCTCATGATCATAGTGTTTACTGCTTTACCAATTTGGGAAAATGTGAATGGTCATCTCCCCTGGACAGTCCTATATACTCCACACCCTGTGTTTTGTCTTGTACTAAACGTTTTAAAGACGGATTCTCGTCCTATATTCTTCTAGTTATAACTACTAAAGGAACACTTTACCTCTTGGATTTGACTGGCggtaatgtttttaaaaaatttagtttCCCTGGTGAAATTTTTTCATCTCCGTCTTTACTTGGTCGGCAAGTTGTTGTTGGGTGCCGCGATGATTTTCTGTactgtttaaatttattttaa

Transcript

ENSPYFT00000001920

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004235 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF13360 all species →	PQQ_2	PQQ-like domain	Repeat	Interproscan
PF01011 all species →	PQQ	PQQ enzyme repeat	Repeat	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13570 all species →	PQQ_3	PQQ-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR052091 all species →	Family	Beta-alanine Activation and Resistance	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44394 all species →	BETA-ALANINE-ACTIVATING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043041 all species →	Biological Process	amino acid activation for nonribosomal peptide biosynthetic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00142	AASDH; acyl-CoA synthetase	EC:6.2.1.-	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Pteroeides griseum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Pteroeides griseum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →