Gene detail

Detailed information of ENSPYFP00000015259.1 in Pteroeides griseum

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Sequence

CDS

Transcript

ENSPYFT00000016284

ACATTTTCACTTGGACCATTGTGGTGCATTACCATATTTCTCAGAAATGGTTGGCTATGATGGCCCAATATATATGACTCATCCAACTAAAGCTATTTGTCCAATTCTTTTGGAAGATTATCGTAAAATTAGTGTTGAGAAAAAAGGTGAAACAAACTTCTTTACATCTCAGATGATCAAAGATTGTATGAAAAAAGTTATTGCTGTAAATCTTCACCAATCTGTTCAAGTTGACGATGATCTTGAAATCAAACCATATTATGCAGGTCATGTTCTTGGAGCTGCAATGTTTTTAATGAAAGTTGGCAGTGAGTCTGTTGTTTATACaGGTGATTATAACATGACACCAGATAGGCATCTTGGTGCTGCCTGGATAGACAGATGTCGACCAGATGTCTTGATAACTGAATCAACATATGCAACCACAGTAAGAGATTCTAAGAGagtgcgTGAGCGAGAGCTCCTTAAAAAGGTCCATGATACAATTGATAAAGGTGGAAAGGTTCTCATTCCAGTTTTTGCATTAGGTCGAGCTCAGGAATTGTGCATTTTATTAGAAACTTATTGggAAAGAATGAACTTAAAAGCCCCAATATACTTCTCAACAGGTTTAACTGAAAAGGCAAATCATtattataaaatgtttattacATGGACAAATCAAAAAATACGAAATACTTTTGTTCAGAGAAACATGTTTGATTTTAAACATATTAAGCCTTTTGAACGTTCCTTGGCAGATAACCCAGGACCTATGgtTGTGTTTGCCACCCCAGGAATGTTGCATTCTGGACTCTCActtcaactttttaaaaaatggGCACCAGATGAAAAGAACATGATTGTTATTCCTGGATATTGTGTAATTGGAACTGTGGGACACAAAGTACTTGCAGGACATAAAAAGATCGAATTGGACCCAAAAACAACGATTGATGTCAAACTTTCTGTACAAAAAATGTCGTTTAGTGCTCATGCTGATGCAAAGGGAATTATGCAGTTAATACGGCAGgctgAACCTCGTCATGTTGTACTAGTTCATGGAGAATCTCAAAAGATGGAGTTTTTAAGAGAGAAAATTAAAGAAGAGTTTGGTATTGGTTGTTCGAAACCTGCTAATGGTGAAAGTATCTCTGTTTCAACAACTCCTCAAGTGAGAGTTGATATGTCACTTAGTCTTTTAAAACGAAGCATGGACAAAGAAACTGCTCAAGGTCCCAAACGTGCCCGCGTTATTGATAAACTGCCTGTCAGAGGGGTACTAGTTATGAAAGATACGTCGTTGAGGTTATTGGATCAAAATGAAGCTTTTAAAGAACTTGGCTTGGTTGAACATCAGTTGAGGTTTACGTCATCAGTTAATTTAGATACAAGGAAATCAACAAATGACGTCATGGAACAACTACAATTATTATTACATAGTTCCTTGCCTGAACAAAATGTTCGAAGAATAGCAGAAGGGACTTTGGAAGTTGACTCCGTTATAGTCAAGCTCTCTTCAGGTTCAACGACAGAAACTGGCGAGCAAACAAACTGTGATGTTCTTGTTTCGTGGATATATCAAGACGAAGATCTTGGGAGTAAAGTTCTTTCTTTATTACAAACTCAAAGAACAAGAAGTATTGAAGATGGTGAACTTGAGAGCGAAGCAATGTCTCCTGAAGTGTAACTCGTCAATTTAATTAATTGATACCACATGCAACAGGACCACGTGGCAATTATCACGTGACTTGCCTACGCGAATTTGAAAAGTCTTTGACAGTCTTTGGGAGAACGATCGACGAGAAATGATTCGAGTTGAAATTTTTTCTCATGCATTATTTCTTGGTATCGGTTGTATGGTGACGTCATAGCATAACATTTTACGTCATGTAACTGACTCCGTAATTTTCGAACATGCGTATTGATAATGCGCAATGGAAATTACACCGCATGGTGACCTGGGATACAGACTAAATTCAGGAAAAGAAAGGACCATTATTGTCGGATAAGTCATGGaactcttaaccctttctggactgcagACCACctttaacgtcagacgattttacttgtcaatgtggaaagtgcggtccagcaagggttaaaaactatctcactaatcctttctggacggttagccacctttagtattttactctggctaacgccagacgattttacttgtcaacgcggaaagtgcggtccagaaagggttaagcctcttttccacttcagccgtatcgtaccgtaccgtagcgatttcttttatgtgatagtcattagccttggtctggtactcatgaaacaatgaaatacgctacgtttcgctacgatatggttgaagtggaaaacgactcTTACTCTCCAGAGTACTGTGTATTGTTTAATGCTTTATTAGTTTGTCTTACCTGAATACTTGATGAGATTCCAGCCTATGGATTTTGAGGACCCAGTGGGGACTGGGTCTAGTCTTGAATAAACAATTGCGATTCACTATAACGACAAAGATGGCGGTGTGCACATTTttccagaatgcattgcggctATCAAGCGTGAATGGCTGAAAAAGATGGCGAGAAGCACAGATaatggaaggaaattttaacaCTAGAGAGGAAATAACATCATGTCTTCTGTCTAATTCGCCTTTTTTAACAATTCCGTCATCTTTTTCGTTTTTGTCAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21386 all species →	IntS11_C	Integrator IntS11, C-terminal domain	Domain	Interproscan
PF16661 all species →	Lactamase_B_6	Metallo-beta-lactamase superfamily domain	Domain	Interproscan
PF07521 all species →	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF10996 all species →	Beta-Casp	Beta-Casp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048662 all species →	Domain	Integrator complex subunit 11, C-terminal domain	Interproscan
IPR050698 all species →	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan
IPR022712 all species →	Domain	Beta-Casp domain	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR011108 all species →	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11203 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13148	CPSF3L, INTS11; integrator complex subunit 11	EC:3.1.27.-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.