Gene detail

Detailed information of ENSPYFP00000020556.1 in Pteroeides griseum

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Sequence

CDS

ENSPYFT00000021973

ATGGACCAAAGTAGTCCTGCTCGTCAACTTCCCATGCAGTCAACGCCATTTCCTGGTGCTCCTACCACTGGTGGTGCAATTCAGACTGACATGTCAAGATCTGGGACGTTTTCTGgactttgtttttatatttcaaGAATATTGGGGCCCGTTTGGAACGAACGACTGGTCGCCGAAGACTATCATGTTTTGCCTGAGCCTCCAAATAATTTGATCTACAGCCGCTTAACAAGTGTACAACTTGGTTGGTTTGTCGAACAGTTACAAAACCTGGAAAAATGGTTAGAGAAGAATAAGAACTTGTTTGCAGGGTACACTCATGGTCAACAAACCCCGCGACGTACTGAAAAAACTTTACTTTCAGCACAGCAAAGTATTTCACTAGgTGGTGTGAACATCGAGTCTAACAATGTTGTCGCCATTATTCATTTGATAAAGCGTTGTCATGAATTGTTATCTTTATGGCAAATCTTAGATGATAACCAATTTCATCTGGTTGTAGATAGACTTTCACCGGCAACTCGTGATCGTCTAAAGATTTTAAAGTTTCGTGAAATTGTAGTGTCAGGAAATGAAGTCTGCAATCATTTGATTGCGTCATTGATGACGTGTTTTTTGGATGACAATACAACAACAGATATAATCAGCAACCAGTTAAGAGATCTCTGTCCAACACTCTATACTACCGATGATGCTGTTTGTACTAAGGCAAACGAACTACTGGACACGGCTAAAAAATCAACGGACAAATACGAAAGAAAAAGAACATTGCAGGAAGCTACAAGGCTTTACCGTGAAGTGGCTAACCAGATTGACTTGGTGTACATATGTTCTCAATTCCAAGAAcTTCGCTTTTACGAAGGTATTGTGGAATTATCTGTGCACATGGCATCAATACGTGATCCACAAAACCTTGCTCTTGATTATTATGAAAGTGGTGAACCAAGTCACATGGGTCAAGGTCATGATGCATTTCTGGCAAGGAAATATTGCTACAATTGTGTATTGGAGTCTTTAACTCATCTGTTGATAACGAAACAATCTCGAGACAGCTCCACTATGGTGCCAAACAGACCTGGTCCTCCACAAACTGATATAAACGCTTTAACATCAGATGAAGCAGAGCAACTGCTTGAGATGACGCTGGTAACAGCTTTGAGGTCCCGCGATGAACTTTTCCTCTCTTCAATTTTCGACTGGTTAATCGAAAAAAATCTGACAGAGCGGCTACTCGAGGTTCGCTCTGAGTTTTTGGAAACATACTTAAAACGCACAGCTGCGATGCAGCGTCCAAACAACATACCATCTTTGGATTTATTATGGAAATATTACGAGAAAACACAAAACTATTCAGCAGCTTCAAGAACCTTGAGCAAACTAGCTGAACGTGAAGGGAATGATTTAGATTTAGAAGGTCGACTTGAATATCTTTCTCGTGCAATAATGAGCGCTAAAAGTTGTAATGTAAGACCATCTAGTATATCTGACGGTGAATTTTTACATGAATTGGAAGAGAAACTAGAGGTTGCTAGGTTACAACTTCAAGTTTATGAACAGTTACTTCAATTGAAAGATGCAGGACGGCATGCCGATATAAATGAAGCTTTGGACCAACTTAACTCAAAGTTGATGGATGTAACTAAATTGTATGGAGATTTTGCTGATCGCTACAGGTTGCCAGAATGCATGTTGGCCATAATTCATTGTGCTGGACATTTTGACCCAATATTAGTTGATGATTTATGGAAAAGTATCGTGGATGCagAACTATATAGAACAAGACAGGACTCTCAGAATGACAGGATGACTGCGTTACGCTACAAATTGGTTGTTCTTGGAAAAACCTATGTTCATTCAGAAAGATACTTCCCATTGAAATACCTCATTAGAATTTTGGAGGAAAGCTGTTGTCGCCTTGGCTGGGATGCCACTTGGGTGTTTGAAACAATGTTGGAAATCGGTGTCTTCCTTTCAGTACTTCATATAATTTACGACAGATTATTTAAAACTAAGGATCAAGTTTGGCAAAACTTAAACCGCCCATTCTATATCCTAGAAGTTTTATATAATCTTATTCTTAAATTTGTTGAATCTCCAACTCTTGTTCCACCCCAAGACAGACCCACATTTACCGCTACTGTCTACGACGCATGCGCCACATACTTGGTTGAATTACAGTCCATCGGTTCAAGACACGCTGCTTGTGAAGAACTTATTGGAATGTTTAAAAGTTTACAGTCGCGTCTCAAACGTGCTCTCTGA

Transcript

ENSPYFT00000021973

ATCGCTGACTGGGCTACTCAGGCATTCTTTAAATATGGAAGTGCACCTCTACGACATCCAACTTTATTGACGGAGCAGTCTAGAGGAGAAAGAGTTGACCAATACGCCAGACGTACACATCCCGGAGGGGGAGTTTCCTCCGATACGACTATTATCCCTCCAACTCCAATAGTTGGAGGCAGTCATAGCGGGAGTTACTTGGCAACACCTGCCGTAAGGATGGACCAAAGTAGTCCTGCTCGTCAACTTCCCATGCAGTCAACGCCATTTCCTGGTGCTCCTACCACTGGTGGTGCAATTCAGACTGACATGTCAAGATCTGGGACGTTTTCTGgactttgtttttatatttcaaGAATATTGGGGCCCGTTTGGAACGAACGACTGGTCGCCGAAGACTATCATGTTTTGCCTGAGCCTCCAAATAATTTGATCTACAGCCGCTTAACAAGTGTACAACTTGGTTGGTTTGTCGAACAGTTACAAAACCTGGAAAAATGGTTAGAGAAGAATAAGAACTTGTTTGCAGGGTACACTCATGGTCAACAAACCCCGCGACGTACTGAAAAAACTTTACTTTCAGCACAGCAAAGTATTTCACTAGgTGGTGTGAACATCGAGTCTAACAATGTTGTCGCCATTATTCATTTGATAAAGCGTTGTCATGAATTGTTATCTTTATGGCAAATCTTAGATGATAACCAATTTCATCTGGTTGTAGATAGACTTTCACCGGCAACTCGTGATCGTCTAAAGATTTTAAAGTTTCGTGAAATTGTAGTGTCAGGAAATGAAGTCTGCAATCATTTGATTGCGTCATTGATGACGTGTTTTTTGGATGACAATACAACAACAGATATAATCAGCAACCAGTTAAGAGATCTCTGTCCAACACTCTATACTACCGATGATGCTGTTTGTACTAAGGCAAACGAACTACTGGACACGGCTAAAAAATCAACGGACAAATACGAAAGAAAAAGAACATTGCAGGAAGCTACAAGGCTTTACCGTGAAGTGGCTAACCAGATTGACTTGGTGTACATATGTTCTCAATTCCAAGAAcTTCGCTTTTACGAAGGTATTGTGGAATTATCTGTGCACATGGCATCAATACGTGATCCACAAAACCTTGCTCTTGATTATTATGAAAGTGGTGAACCAAGTCACATGGGTCAAGGTCATGATGCATTTCTGGCAAGGAAATATTGCTACAATTGTGTATTGGAGTCTTTAACTCATCTGTTGATAACGAAACAATCTCGAGACAGCTCCACTATGGTGCCAAACAGACCTGGTCCTCCACAAACTGATATAAACGCTTTAACATCAGATGAAGCAGAGCAACTGCTTGAGATGACGCTGGTAACAGCTTTGAGGTCCCGCGATGAACTTTTCCTCTCTTCAATTTTCGACTGGTTAATCGAAAAAAATCTGACAGAGCGGCTACTCGAGGTTCGCTCTGAGTTTTTGGAAACATACTTAAAACGCACAGCTGCGATGCAGCGTCCAAACAACATACCATCTTTGGATTTATTATGGAAATATTACGAGAAAACACAAAACTATTCAGCAGCTTCAAGAACCTTGAGCAAACTAGCTGAACGTGAAGGGAATGATTTAGATTTAGAAGGTCGACTTGAATATCTTTCTCGTGCAATAATGAGCGCTAAAAGTTGTAATGTAAGACCATCTAGTATATCTGACGGTGAATTTTTACATGAATTGGAAGAGAAACTAGAGGTTGCTAGGTTACAACTTCAAGTTTATGAACAGTTACTTCAATTGAAAGATGCAGGACGGCATGCCGATATAAATGAAGCTTTGGACCAACTTAACTCAAAGTTGATGGATGTAACTAAATTGTATGGAGATTTTGCTGATCGCTACAGGTTGCCAGAATGCATGTTGGCCATAATTCATTGTGCTGGACATTTTGACCCAATATTAGTTGATGATTTATGGAAAAGTATCGTGGATGCagAACTATATAGAACAAGACAGGACTCTCAGAATGACAGGATGACTGCGTTACGCTACAAATTGGTTGTTCTTGGAAAAACCTATGTTCATTCAGAAAGATACTTCCCATTGAAATACCTCATTAGAATTTTGGAGGAAAGCTGTTGTCGCCTTGGCTGGGATGCCACTTGGGTGTTTGAAACAATGTTGGAAATCGGTGTCTTCCTTTCAGTACTTCATATAATTTACGACAGATTATTTAAAACTAAGGATCAAGTTTGGCAAAACTTAAACCGCCCATTCTATATCCTAGAAGTTTTATATAATCTTATTCTTAAATTTGTTGAATCTCCAACTCTTGTTCCACCCCAAGACAGACCCACATTTACCGCTACTGTCTACGACGCATGCGCCACATACTTGGTTGAATTACAGTCCATCGGTTCAAGACACGCTGCTTGTGAAGAACTTATTGGAATGTTTAAAAGTTTACAGTCGCGTCTCAAACGTGCTCTCTGAGCATTAATCAAAATGACTGTCATCGTTATAAAAAGTGAAGCTCTTCCAAGCAGCTTACTCCTGCAAATTTATTTAGTTAAAAATCAGTGTCATAAACACAGCATGTAAATACATATTCGAGCATTTCTCCAAAGGACATGTATTtggatattttttaaataaatga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03177 all species →	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007187 all species →	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan
IPR004870 all species →	Family	Nucleoporin, Nup155-like	Interproscan
IPR042538 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 3	Interproscan
IPR042537 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Interproscan
IPR042533 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10350 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP155	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000972 all species →	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228 all species →	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044611 all species →	Cellular Component	nuclear pore inner ring	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSPYFP00000020556.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.