Gene detail

Detailed information of ENSPYFP00000022892.1 in Pteroeides griseum

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Sequence

CDS

Transcript

ENSPYFT00000024343

TCGGTTGGCAATGCAATGGAGCCAgcataaatattgtaaattctGTCGACGTttttattgaatatttttaAGGAATAGTAATTTTGATGTATCATAATGGATTTGAGAAGTGGCAATTCGTTTGGTAATGGCTTGCTGTACGCCGGATTTAATCAAGATCAAGGATGTTTTGCATGTGGAATGGAGAATGGTTTTAGAGTTTATAACTGTGACCCATTGAAGGAAAAAGAAAGACAAGACTTTACAGATGGAGGAATCACGCATGTTGAAATGCTTTTTAGATGCAATTATGTTGCTTTGGTGGGTGGTGGAAAAAACCCCAAATATACTCCTAATAAAGtATTGATATGGGATGATTTAAAGAAGTCTACAGTTATCCAACTAGAGTTCACTAGCGATGTTCGAGCTGTAAAACTTCGGCGGGATAGGATTGTAGTGGTTTTAGAAAACATGATAAAAGTTTTTACATTTACACAAAATCCTCAGCAACTTCATGTTTTTGAAACATCACAAAATCCAAAAGGTTTATGTGTGTTGTGTCCAAGCAGCAATAACTCTCTCCTGGCATTTCCATCTCGGAAATCAGGCCATGTCCAAATCATCGATTTGGCAAATACAGAAAGAGTTCCATTAGATGTTTCTGCGCACGAAGGGCCACTAGCATGCATTTGTCTTAATTTACAAGGCACAAGATTAGCAACAGCCTCTGAGACGGGAACATTAATTCGTGTTTTCGATGCAAGTAATGGCCAACTTCTCAATGAACTAAGAAGAGGATCAGGAAATGCTCATATTTTTTGCATTAACTTTAATAATGACTCCTCGTTATTGTGTGTGTCCAGTGACCATTGGACTGTCCACATTTTTGAAGTTGAAGATGCCAAGAAAAGTAAACAATCAAGtTTCCGTCCTCTCAAGTATTTCAACTCAACTTGGAGTTTTTCGAGATTTCGTGTCCCAGAAGGAGCACAATGTGTATGTGCATTTGGTAATGAGAAAAATACTGTTGTCGcaaTCTGTGCAGATGGTAGCTACTATAAATTTGCATTCAACAGCAAAGGAGAATGTACAAGGGAAGCTTATGCACAGTTTTTACAAATGACTGATGGTGACTAGTTGGTGATAGTATATGCCGTGGGGTGTCAATATCCACTTTCGGTACATCTCGACCAAGTCACAGAATAGCAAATGAGCAGAAGTGTCCCCTActttttatgcagtttactggccagaatgaCTGGCATACAACATGcatcttacaaaaatttcacatgtgatccacatgtgaacttggaacacaacatgtgaaatttttgtaagggtaacgCGAtatatacacacgcaaaaatctcacacgattgaacaatgttgttgacttaacaacatctgaacagtgttgatatcatgcttggacaaggttgatgaaccaacagcattgttcaatcatgatacaacaacattgttcatacctgttgattcatcaacccttgttcatagctgttggaacatgataaatcatgcctgttcaaacgttgttcatagttgttgtaacaacattgttcaagcttaatatttgtcaacaagtgtgaacaagattgaagtcagctatgaacaggtatgatatcaatattaatttatctggctagctcaaggttgttcaatcctgttgagaacaatATTGAGAACAGcgtcgaacaatattgttatcaactacgaacaggctgtgcgtttctgcgtgtgtacgtaaggacacaaacttcaaaggtttcgacttGAGTTGAGCTTTgttcatttcttattctgtgacCTGAACAATCATAGACTTCCACATAACTGGACAATGTGGGTgaacaatttgtaaaaaaaataatttccaGTTAATCAACAGTTCTGAACAATATTTGATTTACCCAGTTTTCTTCAATGACTAACCAAGAATACTTTCTTTACCTCCAATGTCTCCCAGGGGTACCTATATAGCAAAAAAACAAACTTACATGAAAGAAAAGGCT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21032 all species →	PROPPIN	PROPPIN	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR048720 all species →	Family	PROPPIN	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11227 all species →	WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006497 all species →	Biological Process	protein lipidation	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034045 all species →	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034497 all species →	Biological Process	protein localization to phagophore assembly site	Interproscan
GO:0044804 all species →	Biological Process	nucleophagy	Interproscan
GO:0080025 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22991	WDR45, WIPI4, WIPI3; WD repeat-containing protein 45	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.