Gene detail

Detailed information of ENSPYFP00000025033.1 in Pteroeides griseum

Genomic Location: chr4:3784509...3803381
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSPYFT00000026535

atGTCTCAGAAAACGTTGCTGTCGTTTTTCTGGGACTTGGCATCAACAGACGAGAAAGTTCGTATTGATGCCGCTGTTGGCTTGATCAAGCATGTCAAACTGAAAGAGAATGAGAAATCAAATGATGTTAAACAATCTGAGGAACTAAGTTATACCATAACAAGACTGATAAAAGGCCTGGGATCTTCAAGAAAGTCTGCAAGACAGGGTTTTGCCATGGCATTAACTgaaattactttgttatttaaCAATATAATAATAGAAGACATAATAAAACAGTTGAAGGAAATATTAGTGATTACAAAAAGCAGTTCAAGTCAGGAAGAAAGAGATGCTTATTTTGGTCAGATATTTGGTTATGCTACTGTTGGCAGGGTAATCTGTCTTTCAAAACAGTATAAAAATGTAAAAATCCAATTGTCATCTATAGCAACTGTAATTGAAGGACTGAAACAGATTTCAACAAAAAAAAGTTATCTTAAAGAAATTTGTTATAAAGCAATTattgatgtcataagtatgtTAAATTATGATGAATTTAAGGAGTATGTTTTTCCTCTCctggaaaatgatataaaaTGCAGTTGGGAAAAATGTTCACCTGACATACTTATTATCATATTGGGAACATGGAGGTTATTTAAGAATGAAATTGGGAGCAAGATATTCAAAAAATTATGGAAATCTTCCCATCTTGACAGTCCTGAAAATTATCCATGTTTTGCTAAAATATTGCAGAACTCTCATAATTCCCTTCACAAAGTACCTTATGTATGGGAAGAAGTATTTTATTTAGTGCTCAACTCTTCAAGTTCAAACTTTGCAAACTTCTGGACAACTGTTGTTGATGGAAACCTTTTTCAGTCATCACATGAGAAGAAATTCCttggttttaaaattttggaaaacgTTTTACCAATGCTGTCAGTTGATCAGGTGAAAATAGTTTTTAGCGAACAACTGATGCATTGCCTCATTAATTCACTTTCCCATAGCACTAATTATCTATATGCTTCAACAAAACAAATGGTTGAAGGATTTGGTAACAATCTGGTCCAGAAGCAAAAGCAACATTTATCTGTACCAATAATGAGAGAGCTTCTTGGCAGGAATGGAAATATGTGTTTTGATGGCAAAACTCAAACAAAAGCGATTGAAAAACTAATTCCAAAGATACCTGTGGAAGATTTGCCTGGTTTAGTATCTTGGTTGAAAGACGTTTTTATTGCAGGGACGACAAATAATGCAGCAGAAAATGACCAAAGGAATATTGAAAAAACAAGAGAAGGAATTCTGGGCCTGtttttgtcCTTGATAAGATGCAAACAACTAACTCATGTTTCGTCTTGGGTTTTGGAGGCTGTTTACTTCATTTTTGAGCTTGCATATTTTACAAAGAAAGAAATGGCTAACAACGTCACCCCAGTAGTGTCGCGTCGGACTAGAGAGCTCTGTCAACAAAGATTTAACAGCGTCCTTGGAGAGCTGGCCAATTTTTCCGACAAAGCCAAACCGGTAGTTGATGGAACTCCTGAGGaAAAAACTGGGAAGCAGAAAATATATGGATTGGCCGATGATGGCTGTTTGTGGATTTCTCACGTTATGCAGCATGCCAAGGCTCTGTTAAAAAGTCCAGATTTCGAAATCGTTGGAGATACTTGGAGTGAAGAGAcccaaaatatatttaataaaacaataaaaatcgtAAAGAAACTTGAACAAAAGACTGACGAAATGAAACTGGAAAATCGAGCCTTTGAGTTGATGTTTCTTTATGTCGGAGTTCAGTTGTTCAGTGAACCGAGACAAGCTGAGGAAATTCTCgagGAGTTGTTCCAGTGTTACGATAAAGTAAAACCGCAAATGTCTAGTAAGATCCAAGACGAAGAGCCTTGCTGGATTGATGTGATTACAGAAATTCTAGTCAGCTTCTTAACGGATTCTTCAAATCTTCGTCGTCAAGTTGTCAACCAGGTGTTCCATATCATTGTGCCACATCTAACGTCGTCGGcactaaatattattttagaggCAATCGATCCACGAAATGACCTGAACGAAGGCTCTTCTCTGCAAGTTGAGTCTCTCACAGACAGTGAAAACGAAGAAGAGATGGAATCCGATGTCGAGCCAGATACAAAGGAAAACGAAGAAAGTGATGACGATTCAGATTCAGACACGAGTGATGAAAATGACGAGGACGAGAATACGGAATCTGTTGATCCATTGTTTAAGGTCGATTTACAAGCTGCGTTAGGAAATGCATTAGTGAATGAAGAGGACGACAGTATGGAATCTAAATCGGACGATGATGATCTGGACGATGAAGCGATGATGAAGTTGGATAACGCTTTGTCTGAAGTTTTCAAACAACATCTTAAAGCAAAAGAACAGAAGAAAAAAGCCAAAGATGCCAAGAAATCTGtcctttattttaaattaagGGTTTTAGATCTAATTGAGATATTGATCAAGAAGCAACCTTCCAACGAGTTGATATTGGGATTGTTTCAACCGTTGTTGAACATCATACGTACTTGTATTAACAGTAAGGATTATGCAACATTGGGTGAAAGAGCTcaaggaatttttaaaaataagctGTGCAAAATCAAACAGCGACCCCAAATGACGACGTCGTACATTGAGAGTGTTTATGAAAATATCGAGTTTTTACTTAAAGAAGCCAGGAAAAGTCCATCCGTTGCTATAGTTACAATGATGTCAACAGGGTGTTTATTTTTGGTCCGTCAGCTTCGGGGAAGTGTATCTAAGGAAGTGGCACAAAACGAAACGAATGAAAAAAATGCGAGACCTGACAATCCAGAAGagCAACTTTGTATTGGTCGTGTGAAAGCGGCGTACACTGAAGCGCTTAAAGATTTTATGCTCAACAGACATACTCATTTGCATCCTTCATTGTTTGAAGAATTAGTAAACAGATATCCGGATATTGGCTGGCAGTTAGCTGAAGATCTAGTTGGATATATCACACAAGGAATAAATAACTACAGAAAGATTCAAGCATGTACCATATTATTTCAACTTTTAACAAAAAAGGTTCCTTCATACACGTTTCACATGAGAAGTTTAGTAACACCATTGCAAAACGCTTTTCACACTaCTTTCAATCAACTTTCTTCGGCAGATGTTGACATAAAAGTGAAACACTTACGTCAAGTCTTAAAATTGGCCACAAGGTTtatcaaaattataaaaactgaCTCGGATATTTGGTCTTTACTGGACACGGATGACTTAGTTGAAAGTTTAGATATTGCTTCTCAAAGTACAATTGTTCAGAAAGCAAATGACACGAAGAACTTTATAAATGGCCTGAAATCAGAAATTGAGGGTGGGTGCGTAAGTGGTGAATATAAAACAAAGtcaaagaagaaaagaaaacgTAAGAAAAGCGAAAATGAGCAGGTCGATGAAcagaaagaaacaaagaaaacaaaaacgaagaaaaagcgcaaaaatggaaaaaaggaaaaagaagaaattagaATGAATGGAAATTAA

Transcript

ENSPYFT00000026535

TGTAAACACGTGTTGTTGTTTGCGAAATATAAAATTTCttgaaaattgaaaaagatGTCTCAGAAAACGTTGCTGTCGTTTTTCTGGGACTTGGCATCAACAGACGAGAAAGTTCGTATTGATGCCGCTGTTGGCTTGATCAAGCATGTCAAACTGAAAGAGAATGAGAAATCAAATGATGTTAAACAATCTGAGGAACTAAGTTATACCATAACAAGACTGATAAAAGGCCTGGGATCTTCAAGAAAGTCTGCAAGACAGGGTTTTGCCATGGCATTAACTgaaattactttgttatttaaCAATATAATAATAGAAGACATAATAAAACAGTTGAAGGAAATATTAGTGATTACAAAAAGCAGTTCAAGTCAGGAAGAAAGAGATGCTTATTTTGGTCAGATATTTGGTTATGCTACTGTTGGCAGGGTAATCTGTCTTTCAAAACAGTATAAAAATGTAAAAATCCAATTGTCATCTATAGCAACTGTAATTGAAGGACTGAAACAGATTTCAACAAAAAAAAGTTATCTTAAAGAAATTTGTTATAAAGCAATTattgatgtcataagtatgtTAAATTATGATGAATTTAAGGAGTATGTTTTTCCTCTCctggaaaatgatataaaaTGCAGTTGGGAAAAATGTTCACCTGACATACTTATTATCATATTGGGAACATGGAGGTTATTTAAGAATGAAATTGGGAGCAAGATATTCAAAAAATTATGGAAATCTTCCCATCTTGACAGTCCTGAAAATTATCCATGTTTTGCTAAAATATTGCAGAACTCTCATAATTCCCTTCACAAAGTACCTTATGTATGGGAAGAAGTATTTTATTTAGTGCTCAACTCTTCAAGTTCAAACTTTGCAAACTTCTGGACAACTGTTGTTGATGGAAACCTTTTTCAGTCATCACATGAGAAGAAATTCCttggttttaaaattttggaaaacgTTTTACCAATGCTGTCAGTTGATCAGGTGAAAATAGTTTTTAGCGAACAACTGATGCATTGCCTCATTAATTCACTTTCCCATAGCACTAATTATCTATATGCTTCAACAAAACAAATGGTTGAAGGATTTGGTAACAATCTGGTCCAGAAGCAAAAGCAACATTTATCTGTACCAATAATGAGAGAGCTTCTTGGCAGGAATGGAAATATGTGTTTTGATGGCAAAACTCAAACAAAAGCGATTGAAAAACTAATTCCAAAGATACCTGTGGAAGATTTGCCTGGTTTAGTATCTTGGTTGAAAGACGTTTTTATTGCAGGGACGACAAATAATGCAGCAGAAAATGACCAAAGGAATATTGAAAAAACAAGAGAAGGAATTCTGGGCCTGtttttgtcCTTGATAAGATGCAAACAACTAACTCATGTTTCGTCTTGGGTTTTGGAGGCTGTTTACTTCATTTTTGAGCTTGCATATTTTACAAAGAAAGAAATGGCTAACAACGTCACCCCAGTAGTGTCGCGTCGGACTAGAGAGCTCTGTCAACAAAGATTTAACAGCGTCCTTGGAGAGCTGGCCAATTTTTCCGACAAAGCCAAACCGGTAGTTGATGGAACTCCTGAGGaAAAAACTGGGAAGCAGAAAATATATGGATTGGCCGATGATGGCTGTTTGTGGATTTCTCACGTTATGCAGCATGCCAAGGCTCTGTTAAAAAGTCCAGATTTCGAAATCGTTGGAGATACTTGGAGTGAAGAGAcccaaaatatatttaataaaacaataaaaatcgtAAAGAAACTTGAACAAAAGACTGACGAAATGAAACTGGAAAATCGAGCCTTTGAGTTGATGTTTCTTTATGTCGGAGTTCAGTTGTTCAGTGAACCGAGACAAGCTGAGGAAATTCTCgagGAGTTGTTCCAGTGTTACGATAAAGTAAAACCGCAAATGTCTAGTAAGATCCAAGACGAAGAGCCTTGCTGGATTGATGTGATTACAGAAATTCTAGTCAGCTTCTTAACGGATTCTTCAAATCTTCGTCGTCAAGTTGTCAACCAGGTGTTCCATATCATTGTGCCACATCTAACGTCGTCGGcactaaatattattttagaggCAATCGATCCACGAAATGACCTGAACGAAGGCTCTTCTCTGCAAGTTGAGTCTCTCACAGACAGTGAAAACGAAGAAGAGATGGAATCCGATGTCGAGCCAGATACAAAGGAAAACGAAGAAAGTGATGACGATTCAGATTCAGACACGAGTGATGAAAATGACGAGGACGAGAATACGGAATCTGTTGATCCATTGTTTAAGGTCGATTTACAAGCTGCGTTAGGAAATGCATTAGTGAATGAAGAGGACGACAGTATGGAATCTAAATCGGACGATGATGATCTGGACGATGAAGCGATGATGAAGTTGGATAACGCTTTGTCTGAAGTTTTCAAACAACATCTTAAAGCAAAAGAACAGAAGAAAAAAGCCAAAGATGCCAAGAAATCTGtcctttattttaaattaagGGTTTTAGATCTAATTGAGATATTGATCAAGAAGCAACCTTCCAACGAGTTGATATTGGGATTGTTTCAACCGTTGTTGAACATCATACGTACTTGTATTAACAGTAAGGATTATGCAACATTGGGTGAAAGAGCTcaaggaatttttaaaaataagctGTGCAAAATCAAACAGCGACCCCAAATGACGACGTCGTACATTGAGAGTGTTTATGAAAATATCGAGTTTTTACTTAAAGAAGCCAGGAAAAGTCCATCCGTTGCTATAGTTACAATGATGTCAACAGGGTGTTTATTTTTGGTCCGTCAGCTTCGGGGAAGTGTATCTAAGGAAGTGGCACAAAACGAAACGAATGAAAAAAATGCGAGACCTGACAATCCAGAAGagCAACTTTGTATTGGTCGTGTGAAAGCGGCGTACACTGAAGCGCTTAAAGATTTTATGCTCAACAGACATACTCATTTGCATCCTTCATTGTTTGAAGAATTAGTAAACAGATATCCGGATATTGGCTGGCAGTTAGCTGAAGATCTAGTTGGATATATCACACAAGGAATAAATAACTACAGAAAGATTCAAGCATGTACCATATTATTTCAACTTTTAACAAAAAAGGTTCCTTCATACACGTTTCACATGAGAAGTTTAGTAACACCATTGCAAAACGCTTTTCACACTaCTTTCAATCAACTTTCTTCGGCAGATGTTGACATAAAAGTGAAACACTTACGTCAAGTCTTAAAATTGGCCACAAGGTTtatcaaaattataaaaactgaCTCGGATATTTGGTCTTTACTGGACACGGATGACTTAGTTGAAAGTTTAGATATTGCTTCTCAAAGTACAATTGTTCAGAAAGCAAATGACACGAAGAACTTTATAAATGGCCTGAAATCAGAAATTGAGGGTGGGTGCGTAAGTGGTGAATATAAAACAAAGtcaaagaagaaaagaaaacgTAAGAAAAGCGAAAATGAGCAGGTCGATGAAcagaaagaaacaaagaaaacaaaaacgaagaaaaagcgcaaaaatggaaaaaaggaaaaagaagaaattagaATGAATGGAAATTAAAACTAACAGAACAATAAAAGGAAGCATATCACCACGAAACAAAATTTTTAATCGCGTAAAATCcccaaaatattttgtattaataaaaaacaaaatccTTTACTTGTCA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003132 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04931 all species →	DNA_pol_phi	DNA polymerase phi	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR007015 all species →	Family	DNA polymerase V/Myb-binding protein 1A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13213 all species →	MYB-BINDING PROTEIN 1A FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02331	POL5, MYBBP1A; DNA polymerase phi	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.