Gene detail

Detailed information of ENSPYFP00000025097.1 in Pteroeides griseum

Genomic Location: chr3:21276100...21312047
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSPYFT00000026600

CTTTCTTCGAGACCGTCGACTCACGTTCCTCGTGTACAGTTGTCTTCCATAATAGATATCTCGAGATTATAGATTTCTTTCTTTTAAAACATATAACTTTGGGGGACAATCTTTGTCAATATGGATCCAGTTTTACCAGTATTTATTGGCGTTGCCGAGAACGATCAGGTGACTGAACTACGAGATTATCTTAAGTCTATTGGTGGTATATTTAGCGAGAAAGAACCCGAGGACCTCAGTTGTAGTTTAGCAGAGATTTTTGATGTTTGCAAAGACTGTGTAAAATCTTGCAATGAATCAGAGATGGAAGGTTTGATGAACAGTATGTTGTCCCTTATATTTGTCGTTAGTGAAAAACGCGATGACCTTGTTCGAAAATTTATCACAACATTGGTTGATTTGCCAGTGGATCAGCATCCGACAGTGAGACTGCACATATTGAATATGCTGTTCTGTGGTCTAAACGACCTAGATCCTATACGGTACGATGTTTATTGTAGTAGCCTCCAACTTGCATTAAACACTGGATTGATTGACAAAGTGACAACAGATCTCGAACAGGTGAAAGCCTGGTTGGTTCAGTGGAATGATGTGGAGAAGTCACGAAAATTGTACAGACTATTACACTGTCTACTTGTAACTAATAAGCAAAgTGATGATGCTACGAAAGTAATGATTGAACTGCTTGGTACCTACTCTGAGAAAATCGACAGTCAAGCTAAAGAGGACGCCGTCAACTGTATCACGACCTTCATTGACCGACCAGATGCATTTGTAATGGATCACTTGTTGATTTTGGGTCCAGTAAAAAGTCTTGGAGAAGAACTTATGCATCAGTTGTTGGAAATTTTTGTCTCAGGGAATTTAAAGGACTACATGAACTTCTATGAAAATAATTCAAATTTTATTGAAACCTCCGttttaaaaacaAGACTTGTACGTGTAAGAATGGATGAACTAGGAAGCAAAATAATTACCAGTTCGGCAGCTCATCGCACATTTGATAAACAGCAATGGCAAATGCTGCGGGGTAAACTGAAAGAATGGCAAACCAACCTAGGGACCGTGCGAAAACAACTTGGTGATATCAACCCTGTttagtatttaataaagttattttaCACACAGAGAAAATCTAATGTGGCCGGTTGCAACTTGTTGCAATTTCACGATCCCGTATCTTATTTACAGAAAGGGTTTCAGTTTGACAACGTTGTTATATAGGctaagcttaaggtggctatgATACgaaatttttcattgtctcaatcaaaagaacacaaaaagctgttatttaaaggagcagtgccagtccctgcgcatctcttctgctcatgacagacttgaaaaagttgggccaaccttttcaagtttgcaaatccaatatggcgacccagtagggggtgctcatgatggtgtgagagaccattctggtagaaaaaagtctttataactaaaaaataattgagaaaagcatggggaaaagcccataaaaggatatatttcacactaaatatattcgatgtatagacaaatgcgaaaatacaggcgggatatgaacgatcgagtgacagcgagttcgctacctaTCTACTCGCAGAAGGTAGAACATttttctatcatttctttttgtcattttactagtgtaattattgaacaAGGTTTGTTCGCGACTTCGAATATGGAAGGCCTTCTTTCCTCTtctggctacaagagctcttgcagacacaatagtccacttgcgtcattgacattaaaccacgTCAGCAGAAATATGTAGGAAGTTCTcactctttgcatggcatagtaaaaacgtCGAATATTTCTGACGGCtcccgaacagttaagctacatgcgtagaagagatgcgcggggggtgacacttcTCCTTTAATGGAGCAGTCTCACCCCCCgagcatctcttctgcgcatgtagcttaacttaacagttaacagtaaataattacactagtaaaatgacaaaaagaaatgatagagaaatgtttaccttgtgcgaaattccagagagagtaagtgggtagcgaactcgctgttactcgatcgttcatatcccgcctgtattttcgcatttgtccacgc

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005358 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18005 all species →	eIF3m_C_helix	eIF3 subunit M, C-terminal helix	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040750 all species →	Domain	eIF3 subunit M, C-terminal helix domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR045237 all species →	Family	Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15350 all species →	COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002183 all species →	Biological Process	cytoplasmic translational initiation	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15030	EIF3M; translation initiation factor 3 subunit M	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.