Gene detail

Detailed information of ENSPYFP00000027581.1 in Pteroeides griseum

Genomic Location: chr4:5906297...5928225
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSPYFT00000029211

atggCTGAAATCAAAGACCATGGAGGGAAAATTCAAATAGTATTTCTCATTGATGTTTACTCCACAGCGCATGCTATAAACTGCCAGGACCCAAAAGAAATTTGCCAGCAACGATGTGAAGCTATATCACTTTCTGTTCTTCGCTTACTTCTGTTCTTCAACTCGTCTGATGCCGAATATTGGAATAGGACCATTTCGTGGGGTTTCAAATTCTACAACtcaagtgttttaaattttGAGTACAAGCAGCGGCGTTTTTACGAGCTCGACAGCCAGTCCTTTGAAAGATTTGAAAAGGAAATGAAGGAGAAGTTTGGGAATGTTCTTTGCGGCGACGGAGGGACGGTTTTGAAGCAAAATTGTGCTGGGTCGAAGGCCCTTTCTTGTTCATTGACAGAAATCCTTCACGATTTCCCATGGATATCGCCAGACATAAGTTCACCTTCTAGGAATTTGAGAAACAAGAGAATTAATGTCGCGATAGATGGCAGCAAAAAGGCAATGAACTTGCTGTTTGTTTTTGGCGATTGTCCCCTTGGCAACAACGATTTAAAACATTTCTTGGACAAAACTGAAACAAGTTTCAACTGTGAAAATGATTTAGTGAAGGATATTTTTTCTGCAGTTCTTTATAAGGAATTCAGGAATACTTGTAGTTTATCTTTTTTCTGGATTGACACTGGTATTTGGTGTGTAGCTCCATATGAAACAAAGAGTTTAATCAAGGATTGGAGTGGCTATAAAATGATGATGACAACTGCCAAAAAACTTGGTGGAAATTTAATCCCAATTTCCTCTCTCATCCAAGACCTGGATGGCATGTTTCATCCATTTTTTCCCCCAGTTGACCAGACAACTCCAACATCAGACAAGGAAGCTTCTTCTGAGCCAAGTATTTTTGAAACAGTACTAGTTCCAAAAGCTGATAAAGGTTTGAGCAAAGCATTTCAGTTCTCATTTGGTTGTATGGCAAAAACTTTCCTTAGTGGTAGTAACATGGCtggcttaaatatgtttactgCAAATGACTTCTCTAAGGAAAATCTCTTTCATGGGTCACTGTTGTTGAAAGGTAACTTATCACCAATGATCacagaaataaaacaatttaaatctcaGAGGCACCAACTATCCTCAACCAGTAGCCCTGGAAAAAATCACACACAAACAAATCCGAATATGTCCAAAAAGGCACCAGGTAATTCTGAGAAATCTGTTTCAGTTGCAAACATATCCGGGAACGAGTCTTCAAATGGGTGTCAGGATCGCCATGACAACCAGATTTCTCCTGAGACAAAGGATAAAGATACAACCAAAGGAGAAAATGGATTTCTTATCAAAGGTGTAATTTGTCATCAAGATGTATCTCCTTCCTTGTTCCATCCAACTAAGTTGTACTCCTGTGTCAGCTACGACAGTTACTCTGCTGTGAATCTTGAGACAGATTCTAAAACGGTTATGGAGTTCTGTGACGTCGAGACATGCTTGCCTGTGATTGGTGTGTTGCAACCTCTGACGTCAATATGTGCTGTCCTTAGTATAGTGAAAACTGATAGGCTGCTAATGATTGAAAAACTATTACTGCATCAGAGATCACGTGGTTATTCATTGGTACCGCGTGACGTCATCGCTAATGAAGGGACACACGTTCTTCCAGTGGTGTTGCACAAGAACATCAACATCACGACGTCCGACGAGGATGGCACGACCGCTCCTATGGACATTGATTGCAAAAAACGTAAAAGTCAACGAAGTGGAAAAGaagtatatttaaaattaaaagaatATTATAGCGagaaacaaaagcgacaaagtAAAGAACGTGAAGGAGATGTAGAGACGCAACAATCACTGCAAAGAGGAAAGTTATGCCAAAACGCTTCTCATCAAAACAAGTCAATAGAGAAATATATTAGAAGGGTCAAAAAACCTACCCTCCTCTTTCACACTCAAAATAACCGTTCCGTTCCACATGTCTGgtattttcgttttattgtTAGGTACAAGGTGCAGGTATTTCTACGTTTGGAACTGGCTAGTAGGTACGAACAAATGGATCAAGAAAACTTAGCTGATGAGATCACAGTAATGCTCCGGGCTATTTCTTTTCAAAAAGATCCAACATATCTCAGTTCATTTTTGAGGAACAGTATAATTAGAAGGTACGCTGCAAGCCTCTCGAAGCTTCTGTGCCTTGTCTACGATGGCTTGATGCAGAAACCACCCAAGGAGATTCTCTCTCCTTCGCGAGTCTCCAGTGAAGAAGATACTCCTCTGAAGTGTTTCAAAGCTCCCTCAGTTTCAAGTAGATCAGAGAGCGTGGAAGAACCAAAAATTTCTCGCGGGTTAGTTCGTCGACATAGCATAATGGATGTCCAATCTAAACGTCGTGAAATCGTCGTTCCTGTTAAGGGAAAGTCCACAAAAAACCGTAGCAAGGAAAAGAGGCAAACAAGAAGTTCTGGTAAAAAGATTCCAGCTCCCCGAAAACCTATTACCCCGGTGAAGAAAGTCCGACGAAACCTGTTCATGAAAGATGCTGAAGGCAACGAAAAACGGACCTCTCCAAGAAAACAagccaaaacaaaaacaacaacggaAGATACACTTAAAAGACGACATACCATTGCAAGTATTTCTCGATTGAAGAAAGTTGGTGATACGCcagcttgtaaacaagtttctCGTCGCATGCTTCGTCGCCAGGAATGGGCAAGGCGTCGTTCAAAAATCGTAACTGATGTGACAGTTGTCGGCGAGTCGCCGTTAAAAGACGAAGAAGTTCGTCCGTTTCCTAGGAAAAGTCCTCGTAGAAAGGCATCCACATTCTATTCGTCCTCATCTACCAGCACATTAGTGGCTCCAGCAACTTCACAAGTTGCAGAAGAAATGAATGATATGGCAGGTTCTGATCCCAAATCCAATAGAACAGGAAATGTTGTCAAACGCAACGACAGAAGGTTTTCTCGAACGTTGAGTATGACAGAGACAAAGTCTCCTACTAGCCCCAGGGGGAAATTTAAAAGGTCGTTAAGCCTCAAAGAATCGAGTTCGTTTACTACTGAGGAGAATGTTGACAAGGAATCGTTTTCTGAGGTTTTCTTAGACAATAACCCAATGGAATCATCTCTTGACCCAAATGGATCCACGCGAAATGCGATTAAACCAAGCATTCCTAGTTTTTCTCCTGAGCCACTGAGAAACACTACGTTGGTAACTTTGGCTCAACCAACCACTCATACATTCACCTCATCGCCAGCTTTATCCACTACCTCACCTGTTGCATCTTATTTATCACCCTTACAATCCCAACGTTCTTTGTCCGCCCGGAAACAACTTCACTCCCCATCGCCAGTCTTATTCAAGTCACCTGCCTTTAAACAATCAATAGCATCGTTTAGCCCCGATCAAATATTCGACGTTGCTATTCCTTTAACCCCAGTTAAATCAAGTACGAAGTCTAAAACGAGATGTTTTACTCCAACAACGAGTCCTATTACCCCGAATAAAAATAGTGTTTCGCAAAGTTCACCTTATATGAAGAAACGCATAACTTGTGACGTAGGACGCGATCATAGTCAAGGATGTGACGACAAAGACCAGTCGGAAATCATCGTGATTGCTACGCCACAACTCGGTCGTAAACGGTCGTTGTTATCTAAAACTGAACGAAAGACCCAGCCTAGTCGGTCTACTAAGCAAACAGGGAATGGAGGTAACATAAATGTTGCGAATAAAGTTACCCCAGATAAACAGAACAGCATCAGAAGCGGCGCAGGTGTCGAGTGTTCGATTGTAAATACATCTGGGACAAATTCTAGACCTGAGGTTTGGCACAATGATGATATTTCTCTGAATAATCAACAACAGAGCGAGGTTTTTACAAATCATGTTACTACCAAACGGAAGCGTTTGACATCAAAACGTGAACCGAATTTGGAAAGTGTCAGCCCTTTGAATCAAATTTTAAAACAGCGAAAAAATCTTCGAAATAGTCCAGGCAAGGGCCGCGGATTTGCGGGTCCTAGGGGGGGCCGCAACCATCGAAGTATTTCAAAAAGGACTGAATTGCTCGAAGAGCAGAGGTTGGCAAATGAAACATCGAATAACATACGGATTGATCGTATTATTTCGCCTGGCAAAACAAATTCTCCTAGCTCTTGTCAGAGTccgtcaaacaaacatttgttTCGCCACCTCCAACCACACTTCACTCCGGTAGGGTTATCAGCCGGAAGCCTAAAGCACCTCGAGGAATCACCCGTTTTGATTGGCTCGGAATCTCTCGCGTCATCATCTACGTCACACTCGCGAAAGTGGTCCGAACGGTTATCGCCTTCCAACTCGTCTCGTAAGCGCACACGACTTGATTTGtaa

Transcript

ENSPYFT00000029211

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004387 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15292 all species →	Treslin_N	Treslin N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026153 all species →	Family	Treslin	Interproscan
IPR032746 all species →	Domain	Treslin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21556 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0010212 all species →	Biological Process	response to ionizing radiation	Interproscan
GO:0030174 all species →	Biological Process	regulation of DNA-templated DNA replication initiation	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26117	TICRR; Treslin	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.