Gene detail

Detailed information of ENSPYFP00000029009.1 in Pteroeides griseum

Genomic Location: chr5:1391869...1403683
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSPYFT00000030727

ATGAGCGACTTAGATGCATCCGCTGTAAAGAAATTGAAAGTGCCTGAGCTCAGATCTGAGCTTACTAAAAGGGGTCTAGATGCCAAAGGACTGAAGCAAGTGTTGGTTGATAGGTTGTTGGATGCTCTAAACGACGAGCCGATTGAAATGGCTACAGAAgaaaaagaaataccacaggaAGGTGATGAAACAGACGAAGAACCGAGTGAACAAACGAACGAGGAAACAAAGCAAGAAGCTGTGGAAAGTGATTTTAAAGGTGATACTATCGAAGAGAAATTACTTGAGGAAAAAAAGATTGATAAAGACGACGTCACGCAGACCACAACTCCTGATACTAAAAATATGGAAAGCGAAGGTAAGTGTGTAATTAAATCAATTGCATACTTTAATTTCAGTCTTAATAATTCAAAATTTACAAGTAAATGCAGCTTAAGTTGTAGGATGTTTAAATTAATTCCTTTTCACAGACACAGACCTATCCCTATTCTCTCCCATTTTATTATGCCTGGTGCTATTTTTTCTCTTAATGTGTTCTTTTTTGTTTCCCTAGATATTTCTGATCTGTATTTCAAGATTTCTCCAGATGGTTTAACAGGCAACGTTATTGATGCTGAAGGGTTCTCGTATCTATGGGGTGGATCTAAAACAACATGGGGTGTGAATAAAGGAAAAGTTTGTTATGAATGCAAGGTTGGTgttttaaaaaatgttgcaAATGACCTGCCAGACAGTGAGGTGCCAAAAAATGGAGTGAGAGTTGGGTGGTCTGCAACAGAAGCATCTATTCAGCTAGGTGAAGACAGTTTATCATATGGTTATGAGAGTTCTGGCAAATCATGTACTGCTTCAAATTTCTCTGATTATGGAGTGACTTTTACTGAAGGAGATGTTATCGGAAGTTACTTGGATCTTGAAAGTGAAGAGAAGACTATCTCTTTCACAAAGAATGGTGAAGATCTTGGTATTGCTTTCACTTTATCTGAAGAAGACTTGGAAAACAAAGTTTACTTTCCACATGTGATTCTTAAAAATTCTGAATGTCAAATCAACACTGGTGGTCAGgAGGAACCGTGGTTCCCATGCAAAGATGGCTTCACTTTGGTTCAACAAGTTGGAAATGAAAACCTTGTGGAAGGGGAGCGTGGTTATAAAGAAAAAAATGAGTGTGAAGTTATCATGATGGTGGGATTACCAGCTTCTGGAAAGACAACTTGGGTGAACAAACATATTGGTGAACAAAAAGAGAAAAGATATCATGTCATTGGAACAAACAGCATTATGGGGAGAATGAAGATAAATGGCGAAGAAAGAAAGAGATCGTCAGACGACTTCGATAAATTAATGGATAAAGCTACAAAGTGCTTGAAGAAAGTTTTTGAGCTTGCGCCAACCAAAAAAAGAAACTATATTCTCGACCAGACAAACGTCCACCCAACTGCCCAAAAGAGAAAGATGGATCCATTTAACGGTTTCAAGCGAACGGCGGTTGTTCTGGTTCCAAAAAACGATGAATTAGAAAAACGAgcaaaagaaaagaaagaaaaagatgGTTTTGAAATCCCAGAATACGCCCTAACTGATATGAAAGCAAACTTTCAATTACCTCGAGTCGGTTCACTATTCAGCGAAGTAACCTTTGTTGAGGAAAACGAAGAAGAGGCTCATAAGATCATTGGGGAGTATAAACGTCACGCTAAGTCATCGCAGTCGAGAGGACCATCGTCGTACAACAGACCTCGTCGAGATGACCATAAAGGTCGCTTCCACCCATACAGAAGAGACGACCATCGCTCGCACGGCGGTGGTGGACGTGATTTCCGCCACCACTCCGGAGGTCGAGGTGGTGGAGGTGGTTCTGGTTACGGCCGACAACATGGTGGGTCTCACGATCGCAACTCTAGCCGTGGTGGTGGTTATAATAAGGGTTACCAGCATAATTACTCGAGGGGtagtggtggtcgtggtggtggtAGCTACCACCAGAAAGGAAGTCAACAACAACAGTATGGTGGTTATGGAGGGCGACAGTATACCTTTGGTCAACAACAAGGTTATGGTTTCCAAGCCCAATACCCGGCTGGACGAACAGCTTATGGTGGGTTCCCTCAACAGCAACGTCAACCATATTATCCTCAACAGAACTATTACCAACAAGGTTATGGTCAACAACAATACGGAAGAAGATACTAA

Transcript

ENSPYFT00000030727

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001450 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035778 all species →	Domain	Heterogeneous nuclear ribonucleoprotein U, SPRY domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12381 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15047	HNRNPUL1, E1BAP5; heterogeneous nuclear ribonucleoprotein U-like protein 1	-	Influenza A	ko05164	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.