Gene detail

Detailed information of ENSPYFP00000029965.1 in Pteroeides griseum

Genomic Location: chr6:3782091...3791341
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSPYFT00000031757

CCGCTCAAAAGGGGAGACGCTTATCTAAAAGAGATGTTTATCTAAAAGGGGCGCTTAATGGGTAAAGTCATATGACCATCAAAACTGCCGACACCGACAGATATGTAATATTTCACTTCCTTATTTGTTCACCCGCTGACCTGTTATTCTAAGTACACGTCATTGTCAATATTGCACGCGAATTTCGAATATCCATCTTGGGGTCGCGTTCTCTGGCAAAATGCACTCGTTTTGTGGCAGGAAAAGTTTGGTTTTACTCGCACTTTGTTGGCTCTGTATTACTCTCTCGTGCGCCAACAAAGTGGAACCCGAAGAAGAGTCATGTCGCATGTACGCTGGTGGACAAGTGTACCCACAAGAGAGGAAAAGCTCCGAACATGCTCTTCATTGGAGTAAAGCTCAAATTTCTAAGCCTGCTCCATACTGGGAAGGAACAGCAGTTGTCAATGGTGAATTTAAATCATTAAACCTGACAGATTTTCTTGGAAAATATCTGGTGTTTTTCTTTTATCCTCTGGACTTtaCATTTGTTTGCCCTACAGAAATCATTGCATTTAGCAATCGCATTGCAGAGTTCCGCAAAATAAACACTGAAGTTGTGGCATGTTCTGTTGACTCAGTTTTTACACATTTAGCTTGGATAAACACAGCACGGAAAGATGGTGGCCTAGGAAAACTTGGTTATCCGCTTTTGTCTGATCTTAATCACCAAATCGCTAAAGATTATGGAGTATTACTGGAGAATGAAGGACATACATTGAGaGGGTTATTTATTATCGATGACAAAGGTTTTCTAAGACAGATCACAATGAACGACTTGCCGGTCGGTCGTTCTGTCGACGAAACCCTGCGCTTGGTTCAAGCATTTCAGTACACCGACAAACACGGTGAGGTGTGTCCCGCTGGATGGAAGCCTGGAGCCGATACAATTGTTCCCGACCCGAAGGAGAAACTCGACTACTTTACGAAACACGACGAAGATGGAACGGAAACCACGAAAGATGAGATGTGATCTAAAAGACCTGGCAGCGAAGAACGGAAAGAGGAACGAAAAGCATGTAATACCAGCGAGAATGTCGGCTTTAAAATCGATACATTTTTAGCGAGAGATGCTTTAACATAAAGCGTATTTAAACCTGAACTTTTTCCTACTATTTTTAGACGTATTTTCTAGGCTTTTTGGTGCCATTTTAGAGTTCCTGACATGAGTTGTTCAATGATCGGTTAGTGGTAACCTTTGGTGAAAGTGTGCCTCAACCATATTTTTTAAGATTTGGGAAAAAAGTATAACCAActgaaaataaaattgttaaaaaaaattccaCAAAATTTGTCCTTGGTACTTTTTGAAGGCTTCAAAGATGCTTTCACAATTTTGACCGCGTGTCAACGGACTGGTACCTGTGACGTAGAAGAAAACGTAAAGGTGGATTttcactaggcgaaatttttcgccagaattctggttagttctggtcgaCACGGCTTgcgaaacaaaagaaaaattcgctccgcgcgaaaaatttcgcctagtggaaatccgctttcaaggccggtttccactgagaaaatatttcgcgcggaagaactttcttttgtccaaattgaaaagatttctctcagttccatttcactgatttcggaagacagaaaaagaaaatctcagttcgcgagaaattttttctcagtgaaacCGGCCTTCAACCAGAACTACCggtaaccagaattctattgaattcgaacaaaagaaattaattttgCGCGAAAAATTTTGCCTAGATGTTTGCAGCATCGAGAAAGTTTGGACACCAACCGGCAACACGTGTGTTTGGCGTTTGCTAATAGTTTTTAGGTTTTTGCTTATGATCAATGCTTAAATAGAACCCGTGTCCTTGACAACTGACAAAAGATGACGTATTCACTTTGGTACTCTATGTTCATGGCAGCGAACTCCAAGGAAACTGTACAGTTCACTGGTCCATGGTTACCTCTACCTACCTCGCCAGACCAG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001456 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10417 all species →	1-cysPrx_C	C-terminal domain of 1-Cys peroxiredoxin	Domain	Interproscan
PF00578 all species →	AhpC-TSA	AhpC/TSA family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019479 all species →	Domain	Peroxiredoxin, C-terminal	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR050217 all species →	Family	Thiol-specific antioxidant peroxiredoxin	Interproscan
IPR000866 all species →	Domain	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10681 all species →	THIOREDOXIN PEROXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051920 all species →	Molecular Function	peroxiredoxin activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0008379 all species →	Molecular Function	thioredoxin peroxidase activity	Interproscan
GO:0033554 all species →	Biological Process	cellular response to stress	Interproscan
GO:0042744 all species →	Biological Process	hydrogen peroxide catabolic process	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan
GO:0016209 all species →	Molecular Function	antioxidant activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03386	PRDX2_4, ahpC; peroxiredoxin 2/4	EC:1.11.1.24	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Pteroeides griseum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Pteroeides griseum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →