Genomic Location: chr7:13416996...13426786
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families
| CDS |
| ENSPYFT00000034451 |
| Transcript |
| ENSPYFT00000034451 |
| Protein |
| ENSPYFP00000032485.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006437 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18517 all species → | LZ3wCH | Leucine zipper with capping helix domain | Domain | Interproscan |
| PF07106 all species → | TBPIP | TBPIP/Hop2 winged helix domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR040661 all species → | Domain | Leucine zipper with capping helix domain | Interproscan |
| IPR010776 all species → | Domain | Homologous-pairing protein 2, winged helix domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15938 all species → | TBP-1 INTERACTING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000709 all species → | Biological Process | meiotic joint molecule formation | Interproscan |
| GO:0000794 all species → | Cellular Component | condensed nuclear chromosome | Interproscan |
| GO:0003690 all species → | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0007129 all species → | Biological Process | homologous chromosome pairing at meiosis | Interproscan |
| GO:0010774 all species → | Biological Process | meiotic strand invasion involved in reciprocal meiotic recombination | Interproscan |
| GO:0120230 all species → | Molecular Function | recombinase activator activity | Interproscan |
| GO:0120231 all species → | Cellular Component | DNA recombinase auxiliary factor complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06695 | PSMC3IP; 26S proteasome regulatory subunit, ATPase 3, interacting protein | - | Proteasome | ko03051 | deepkoala |
Genes whose expression across the transcriptome samples of Pteroeides griseum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pteroeides griseum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
