Gene detail

Detailed information of ENSPYFP00000033016.1 in Pteroeides griseum

Genomic Location: chr6:19444650...19455906
NR annotation: no NCBI-NR hit recorded
Species Pteroeides griseum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSPYFT00000035008

TAGGCACTTTTGTTGGGCTGAAAAAAAGACTATTCTTTTGACATTaaagcaatttttttttataacatTGGCAATGTCATGGTCAGTTGCCCCCCGGTTTTTACGCCATTGCAATTTGGTTGTTGGTTTACGAATGTCAGGTTGTATCGAGAAATATCTTACGAAAACGATGGGACGAAAACGTAAGATTGAAGAGGATGAAGGAAAGGCAAAGAAAGTTAAGAAGGTTGAACAAAACGATACAACCGAACAGCAAGATACGGAGGAAGCAACAACTTCAACTGCTGAATTTGATCTTGGTGATAATGGAAGTTCTTGGAATCTGAAGATTGTTTCATGGAACATCAATGGTGTAAGAGCTTGGATAAAGAAAAAAGACTCCTTGGTTTATGTTAAGAAAGAAAATCCCGATATTTTTTGTGTTCAAGAAACTAAATGTAGTGAAACTGATATACCAAAgGAGCTAGTACAATTGAAAGGCTACCATAGATACTGGATAGAATCAAGTACAAAGAAGGGATATAGTGGTGTAGGATTGTTTTCAAAAACCAAACCAAAGAAAGTGACTTATGGAATAGGTGTTTCAAAACACGACAATGAAGGACGAGTGATAACAGCCGAATATGACAAGTTTTTTCTCGTAACATCATacACACCAAATTCTGGACAAGGATTAGTAAGGTTAGAGTATCGTCAAACGTGGGAGAAAGATTTCCGTGATTATCTCAAAAAGTTGGATGCTGACAAGCCCGTCATCCTTTGCGGTGATCTGAACGTTGCTCACAAAGAAATTGACCTAGCCAACCCAAAAACAAATTCCAAAACGGCAGGTTTTACAAAAGAAGAAAGAGAGAATTTCACTTGGCTTCTTGAGGAAGGTTATGTTGATAGCTTTCGACATTTTTACCCTGAGAAAGAAAAGCAATACAGCTTTTGGTCTTATAAAAGAAACGCCAGAGAAAAGAATGTTGGATGGCGTCTGGATTATTTTGTGATTTCTCAAAGATTTATGTCCAAAGTTTCAGACAGTTTAATACGAAGCAAGATTCCCGGCAGCGATCATGCCCCGGTAGTGTTGTTTTTATCTTTATAACGCAACAAACGTTCATTGTATAACTTCTTTCATATTATTAGGTTTTTGTTATAAAGTAATCAGTTTTATTGACTTATCACAATCTCTGGTCTTCATGTTAGCCGGATTACTTAACATGTAAAATTCACAACCGCAGACCATATCGATGAAATTGCACAGATGTTCGGCGCGACTTTTCCTAAAAACCCTGGAGGTTATAATATAGATTGTAGAACTTTATTTCTGATAaacgtttatcgtgtaattagtgtcatgaccaaatttgaacgtccaaacttgtatatgtAAAAAGATGTAGGCGTATGAAGAgaaatttccgagcatcaggcgataACACTGCGAGAactgtgtgacgtcatttgtaacattccgtgttttttatgacaaaatttctacagatttatgttgtttatacttaccttgtttgcacgacttatgacgattgatccgaaggagtcgagtaagacattatGAATGATGTAACAaatattatttcacaatttagctatgctcgaatggcacaaatgacgtcacgccgaatagtttacgacgatttccgatttccattcattattaaaatcaTGAACtctaaacaagaatatctctcaaagtttttaccagactagcttcataatttgataggtagtttctCGCCTGTatggatcacgctatcctgcacggcAAACCATTTTGGTGGTATTATCCGCTATTAGTATATAGTTGAGTTGATCTTGTTTGATATAGCGCACCTTGATTAAATAATTAGGTGAAATTTGTGAAGAAATTTGGCAAAATCCgcattgaaaatatttaaagtcgataaaatcttgttggaaaacctcctcaactcaacttgttggaaaacctcctcaaacCCTCTGTCACACGaggcaatttgctcatgcaacttgtctcacaaGACTGATCTCAaaggatgttcaatacacaagattcatatgaacaataaacgacgttgcacttcattgatttactaatgct

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003223 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR004808 all species →	Family	AP endonuclease 1	Interproscan
IPR020848 all species →	Conserved_site	AP endonuclease 1, conserved site	Interproscan
IPR020847 all species →	Binding_site	AP endonuclease 1, binding site	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22748 all species →	AP ENDONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0008311 all species →	Molecular Function	double-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSPYFP00000033016.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.