Gene detail

Detailed information of ENSVTRP00000002633.1 in Madracis senaria

Genomic Location: not available for this species
NR annotation: XP_022802713.1, LOW QUALITY PROTEIN: RNA-binding protein 28-like [Stylophora pistillata]
Species abbreviation MSENA · all data for this species · gene families

Sequence

CDS

ENSVTRT00000002906

atggcggacgatAGCAACGAGAACAGTGGAACGAAAGATGGTTCCATAGTTTCGCAGAAGGTGCTATTTGTGCGTAATCTGCCCTTTTCTACGACGGACCAAGATCTTGAAAATATATTCAGTAATGTTGGACCTATCAAGCGTTGTTTTGTGATTCGAGATAAAGgGATTAAGAACTCCTGTCGTGGATTTGGTTATGTTACATTTGCTCTTGCTGAGGATGCACAAAGAGCTAAAGATGTTGTGAAAACATTTGGGGGACGACAACTTACTGTTTGTTTTGCTAATAAGAAACCCAAACATGAAAAGAGACGAATGAAGCAGGGAGAAAATCCTGAGGCTGATGATGATGGAAaccacggaaaaaacaacaaaaaaaAAATGGCCTCagatgatgatgaagaagaaACACCAccgaaaaagaaatcaaaaagcAATGATCAAGAGGAGAGAATAATAAAGTCTCAGGAAAGAGGCCCAGGGAATGATGCTGGTAGAACTATTGTGCTGACAAAACTTGCCGAAGATCTCAATCAGAACCACATCAGAAAAAAATGCCGCAAGATTGGGCCTGTAGACAAGGTGACTGTCCCAGTTGAGGGCAGGGACACACCTACTGCATTTGTCATTTTTCAGTCCCATAAAGATGCAAGAGAGGCTGTAAGGAAATTAAATGGCAAGATATTTAAAGGCAATACTATTGAAGTTTTCCTCCTTTCTAGAGAAGGGAAGACAGTCAGTCAGAAATCTTTGAAAAAATCCAAAGTTATTGTCAGGAACTTGTCATTCAAGTGCAAAGAGGACGACCTCAAGAAGTTTTTCTCGCAGTTTGGACAGATCACTGAAGTCCACATTCCGACCAAGATGGAAGGAAAACGAAAGCTTAGTCTTGGTTTTGGGTTTGTGCAGTTTACCAGTGTATTTGATGCTGCGAAGGCTATCAAAGAGGCAAACATGAAGGAGATTGCTGGAAGACCTGTCGCTGTTGACTGGGCTCTGGACAAAACTGTTTATGAGACGAAAAAAGGAGAAAATGCTGAAAAGGAGAAAGGCGCAGATGAAGATACTGGGAATAATGAGTTAGACGAGGACGAAGAAAGTGGCGGCGATGTCTCCGACAATGACTCTGATGTTGATTCAAATGAAGAGAAACCCGTCAGGTCTGATAgcgaagaggaagaggaagaactAAACGAAGACAGCGATCAAGAACTCAAACGCAAAGAAGAAGACTCCAAAGCAAAGAAACTCAAACAGCCATCCGATGTTAAAGAAGGCAAGACCTTGTTCATCCGTAACATTTCGTTTGACACCATCGAGGAGTCACTTTACGAGCTGTTTGAACAGTTTGGCGAGTTGGACTATTGTAAGATGTTAGAGGACAAACGGACGGGTCACAGTCGGGGGATGGCTTTCGTGAAGTACAAAACAGTGGAAAGTGCTGAAAAGTGCCTTATGGAAGCGAATAAAGATGGGCCAGCCCTTTccctggacaattttacactgAATGTGACGAAAGCAGTTACGCGTGGAAAGGCGGCAGAACTAGCAAAGGAAAAGAAGACGGAAGGGACCAAGGAGAGCAAGGACAAACGAAACTTATACCTGGCGAAGGAAGGTCTCATCTTACCTGGCTCAGAAGCTGCTCAGGGCTTGTCTAAAGCTGATTTACTGAAGAGACAGAAAGCTGAAGCGGAGAAAAAAGCGAAGCTAGAGAATCCAAACAATTTTGTCTCATCAACCCGGCTTTGTGTGCGAAACCTTGCTCTTAGCATTGATGATAAACAATTACAAGAAATCTTCAGCACCGCCACAGGAAAGAGAATGCGCGTGAAGAAAGTGCTGATCATCCGAAGTAAAGATCGAGTGGACAGCTCGGGCCGCGGCCGCTCCATGGGATACGGGTTCGTGGAATTCCCCAATCACAAAGACGCTTTGGCCGCCCTGCGAGCGACCAATAACAATCCAGCCATATTTGGCCAGGACCGTCGGCCGATTGTTGAGTTTTCTATAGAAAACAGCCTCGTTCTCAAGACGAAGCAGCGGCGGCTGGAGAAGGCTCAACACAGGCAGCAGCAGGACGTAGGAGAGCATGCGCGCGATGGACAGCCTCAGACAAACAAGGAGAGAAGGTTGGAGAGGAGTCAGAAACGAAGAGAAAAACGACAGAGAAAGAGAGAagcaagaaagaaaagaaaactggaaCAGGCAAAAGATGGTGAAGGTGATAAGATAACCAAGGAAagtaacaaaacaataaaggcAGAGAACAAAGGGAACTTATCGTTATCGAAAGCAAAGAAAGTAAAATTTTTGCCGAGAATGGACTCTACAGGTTCTGAGAAGCGTGataaaaagaatgaaaaaagaaagaaacatccTTCTCTGGCTCCCAGAAACGGGAACAATTTTCATACGAAAGCTGCAGCAGATTCCGATTCGAAGACAAGTTCCAACTTTAACAAAGTGGATAAAACTCTCAAAAAAAGGCAAGAcattcagttcaatattaacaAAACCTCCGGCATTCCAAATAGAAAGAGAAAAAGTGCTTGGAAAAAAGAACAAGAGCAAAAAGACGAATCAAAGTTCTCCGAAATGGTGTCCAAGTATAAGAACAAGCTGTTTGGAATGGACGACAGTGAATCATCCGCAAAACGGGCGCGTTGGTTTCAGTGA

Transcript

ENSVTRT00000002906

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CGC6	RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4
Q9NW13	RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3
P37838	Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005182 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051945 all species →	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039 all species →	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14573	NOP4, RBM28; nucleolar protein 4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.