Gene detail

Detailed information of ENSVTRP00000010126.1 in Madracis senaria

Genomic Location: not available for this species
NR annotation: RMX57833.1, hypothetical protein pdam_00018581, partial [Pocillopora damicornis]
Species abbreviation MSENA · all data for this species · gene families

Sequence

CDS

ENSVTRT00000010712

GGTTGTGCTGCAACTGTTGCACCAGAGAATGTGTATGTCAGAGACTGGGTGCTAGTAAGGAAGATGGCGGACGAGAGTTCCAGTAATCGTTTTGAGGACGTTCTTTCATCCTCTGAGAGCAACTCTCCTTGCGCGCTTTGCGTTAAAAAAGTCTCCAAGTACACGTGTCCCCGCTGCCATGTTCGTTACTGTTCCAGTGCGTGTTATAAAAGTGACAAACACTTGCAATGTTCGGAGCTTTTTTACAAAGATTGTGTCATGGAAGCAATGATCGAACAGCAAGGCAGTTGTGAAGACAAGCTTAAAATGCTCGAGATGTTGAAAAAATTAGAGAAGCAGGATAAAGAAGAGAACGCCTTGGACACTGAAGGTCTGGAAGAACGATTACATGGTATTGATATAAACAATGATCCAGAGGCCGTGTGGTCGGTGCTGACAGACGGTGAGCGAAAAGAATTTGAATCTGCTGTAAAAAGCGGAAATATTTCTGATGTTATTGATGTTTGGACTCCGTGGTGGTCTGTAGGAGATGACAGAAACAACAGGAAGAAGATAGAGGATATAAGTAAAGAAAGCAGCGCTTCAGAAAAGACTGATGTACCAAAAAGCAACCAACTTCAAACAGTGGAAAAAGATAAAGTTCAAAACATGCCACCTGTCAAGAAGAATATCAAGCCATTACATTCAGTCATGAAAAATTCAAATGTAAATCCACATGTCCGGTTCAGTTGTATTGATGTTGTCTTCTCTTATGCTTATATCATGAGGCTGTACAATGGGTGCCCGGAAGACAGTTTGGACCAGACGGCTGAGAATTTGTTGCAGCTTTCACCTGTTCTCTCTCAAAATGCTGTGTTTGATAGTGTGGAATCAGTACTTCACAGTTCCTTGAGTGCTGTACAGCATTGTAAGGATCTCTATTCTGAAGAATTATCTCATCAGGTCCTGCTTGATATTATTTCTTTGATCAGAGGTGATGCTGTTACAGATGGAAAGAAAGCAAACTTTGTAGAAAGTGCACTGTCTCATCTGTGTCGACTTCTCAGTGGAGGAAGAGAAAGACTAAAGGTCAACTCCACAATGAACCAACAAGAAGCAGATTTATGCAAATCTTTGTGGCTCGCAAAAAAGAAAGTAGAGTTTTTGTTAGCATGGGTTCACACATACCCTGACATTTTGCAATCTCTTTTACTAAACATACAAGTTGTTCGCACAGAGGTATCCATTTCCCATAAACAACACAAGGAACAAACAGAAAAGCTTGAGCAATACATGGAAGTGAGCTCCGCCTGCATAAGTTTATCAGGTCTTGGTTTGACTCGTATCCCAGATGAGCTGCTTCACCAGCTACCAAATCTCGTAGAGCTTGATCTGTCTAAAAACAAACTGACAGCTATCAACAGTGAAGAAAGCTTCCCAAAACTCAAAGCTTTAAGTGCGGCCAACAACCAGCTTAATAATGTCGATGGACTGACAGCTTTTCCTAATCTGGTCAGCTTGAATGTAACCAGCAATCCAACTCTTGAGGTCTCTGACAAGTACAAAGTGGTGTCTCTCTGTCCTCTGTTAAAAACACTGGATGGAAAAGATATCAGTCTGATGAGGGATGCTATCACTGACTTATGGAACGAGCAGTTTAACACAAAGTACAATCAGTTAGATGGAGATAAAAGaaatgaacttgaaaatgaGTTTATTGAAAAGCTCAAGACTGAAGTTACTTGTGGCCCTGCAATGCTAAAGAACTATAGAGAATATAAGCTTACAATTTTAGGAAAACTTCACTTCAAGAAAATAAAGGGTGAGGAAAAGACATCTGAAGAACCACCTTCTAAAAAACAGAAAACCACAGAAGTAAATGGACAAGCTGAAATTACAAGTGACTCAGAAGACAAAGCAAAGAATGTGAAAACACCACAGGGGAGAGTGAGTAAAAAGAAGGAAAGAACTCCAAGAAAAGAAACCAAGACTGAGAGCAGTAGTCCCGCTTACTGTCAGTTCGCTGTGTCTCATTTGCTTCAAACACATTCGCTAAACAATGATCCCACAGACAGGAAGACTCAAGTGTGGGGCTGTGAGTTTGAACCAGATCCTGAGAGAGAAGGTCACACAACAACAACTTGTGCAACATGTGGAGGGGATTCTGTTTGCTTTGTTGACTGCAGTACTGGACGTGTCatgaaaaaatacaaacaaccaGGAGAAACATTTTACTGTTTAGCATGGACTACAGTTGTTTTGGACTCTGAAACTGATAAGAAACGAAAAAGCAACCTCATTGCCGCTGGAGGATTTCAAAATGACATTAAAATAATCGAACCTAATCAGCTAGTTTGCTTTGAAGAAATTCAGGGTCACACAGGAGTTTTAGAATGTTTAGTGTTTCACCCTCACCATCCCACGTGGCTGCTTAGTGCAGCTGATGATAATACTATCATGGTTTGGGAAATCGGTCTGCCTAAAGCAGCTGAGTACCAAGGAAAATCACAACTCCTGTTGACACTGAAATCTCGCTCAATAGTGCGATTATTCTCCATCCCTCCGCATGGCAAAGTAGTTGTTGGGGGATGTGATGATGGCTGTTATATCTGGAACCTTTATGATAGTAAAAGTGATAAAGGAGATAAAAAGGATAAAACGAGAACATATTTTGGAAAGTTAGATTTTCCTGGTAAAAAGACCATTCCTTTAGACAGTATTGTGTGCCTGTCAAACAACATGATTGCAACTAAAAGAGTTGAAGAAGGATGTATCCATATTTGGCACTCAGAGTCAGAAATGATGAATGTAAGTTGGAATGATTTCAGAGTGGCACACAAGCTGTCATGGAGGCTCACAGAAGTACCTTTCTTGAAATTCGGCTTTGTACCAGCTTACTCAGTATTGTTGGCTGGGGATGATAGAGGATCCGTTTGGTTGTACGACGTCGCATCAAGTGTGTTAGAGGCAAAGAGTAAGGACCTTAAACAGACACAGGTGAGGACTCGGGAAAAATGGCTTAAGAAAaaatggttaagtcttacgagcctagtggcccattactgccggagcttatcccggtttccgtag

Transcript

ENSVTRT00000010712

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0JZ65	Leucine-rich repeat and WD repeat-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=lrwd1 PE=2 SV=1
Q6GM71	Leucine-rich repeat and WD repeat-containing protein 1 OS=Xenopus laevis OX=8355 GN=lrwd1 PE=2 SV=1
B0R160	Leucine-rich repeat and WD repeat-containing protein 1 OS=Danio rerio OX=7955 GN=lrwd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005297 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04438 all species →	zf-HIT	HIT zinc finger	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR007529 all species →	Domain	Zinc finger, HIT-type	Interproscan
IPR052489 all species →	Family	Leucine-rich repeat and WD repeat-containing protein 1	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24370 all species →	OPTICIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSVTRP00000010126.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.