Genomic Location: chr5:34290524...34310177
NR annotation: XP_027047912.1, uncharacterized protein LOC113675519 [Pocillopora damicornis]
Species Madracis senaria · all data for this species · gene families
| CDS |
| ENSVTRT00000029368 |
| Transcript |
| ENSVTRT00000029368 |
| Protein |
| ENSVTRP00000027739.1 |
| UniProt accession | Description |
|---|---|
| Q4DJ07 | 9,11-endoperoxide prostaglandin H2 reductase OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511287.49 PE=1 SV=2 |
| A1T726 | Aldo-keto reductase Mvan_2161 OS=Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) OX=350058 GN=Mvan_2161 PE=3 SV=1 |
| A4TE41 | Aldo-keto reductase Mflv_4205 OS=Mycolicibacterium gilvum (strain PYR-GCK) OX=350054 GN=Mflv_4205 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001370 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13360 all species → | PQQ_2 | PQQ-like domain | Repeat | Interproscan |
| PF13621 all species → | Cupin_8 | Cupin-like domain | Domain | Interproscan |
| PF01549 all species → | ShK | ShK domain-like | Domain | Interproscan |
| PF01011 all species → | PQQ | PQQ enzyme repeat | Repeat | Interproscan |
| PF13570 all species → | PQQ_3 | PQQ-like domain | Repeat | Interproscan |
| PF00248 all species → | Aldo_ket_red | Aldo/keto reductase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR002372 all species → | Repeat | Pyrrolo-quinoline quinone repeat | Interproscan |
| IPR003347 all species → | Domain | JmjC domain | Interproscan |
| IPR011047 all species → | Homologous_superfamily | Quinoprotein alcohol dehydrogenase-like superfamily | Interproscan |
| IPR018391 all species → | Repeat | Pyrrolo-quinoline quinone beta-propeller repeat | Interproscan |
| IPR018170 all species → | Conserved_site | Aldo/keto reductase, conserved site | Interproscan |
| IPR036812 all species → | Homologous_superfamily | NADP-dependent oxidoreductase domain superfamily | Interproscan |
| IPR041667 all species → | Domain | Cupin-like domain 8 | Interproscan |
| IPR020471 all species → | Family | Aldo-keto reductase | Interproscan |
| IPR003582 all species → | Domain | ShKT domain | Interproscan |
| IPR011044 all species → | Homologous_superfamily | Quinoprotein amine dehydrogenase, beta chain-like | Interproscan |
| IPR023210 all species → | Domain | NADP-dependent oxidoreductase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43827 all species → | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
ENSVTRP00000027739.1.Genes whose expression across the transcriptome samples of Madracis senaria tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Madracis senaria, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
