Detailed information of ENSZOFP00000010671.1 in Porites cylindrica

Genomic Location: chr13:23526414...23561045
NR annotation: no NCBI-NR hit recorded
Species Porites cylindrica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002136 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01363
all species →
FYVEFYVE zinc fingerDomainInterproscan
PF01504
all species →
PIP5KPhosphatidylinositol-4-phosphate 5-KinaseFamilyInterproscan
PF00118
all species →
Cpn60_TCP1TCP-1/cpn60 chaperonin familyFamilyInterproscan
PF00610
all species →
DEPDomain found in Dishevelled, Egl-10, and Pleckstrin (DEP)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043548
all species →
Family1-phosphatidylinositol-3phosphate-5-kinaseInterproscan
IPR036388
all species →
Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR011011
all species →
Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR027410
all species →
Homologous_superfamilyTCP-1-like chaperonin intermediate domain superfamilyInterproscan
IPR000306
all species →
DomainFYVE zinc fingerInterproscan
IPR036390
all species →
Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR000591
all species →
DomainDEP domainInterproscan
IPR027484
all species →
Homologous_superfamilyPhosphatidylinositol-4-phosphate 5-kinase, N-terminalInterproscan
IPR002498
all species →
DomainPhosphatidylinositol-4-phosphate 4/5-kinase, coreInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR027483
all species →
Homologous_superfamilyPhosphatidylinositol-4-phosphate 4/5-kinase, C-terminal domain superfamilyInterproscan
IPR017455
all species →
DomainZinc finger, FYVE-relatedInterproscan
IPR027409
all species →
Homologous_superfamilyGroEL-like apical domain superfamilyInterproscan
IPR044769
all species →
Domain1-phosphatidylinositol-3-phosphate 5-kinase, PIPK catalytic domainInterproscan
IPR002423
all species →
FamilyChaperonin Cpn60/GroEL/TCP-1 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46715
all species →
1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000285
all species →
Molecular Function1-phosphatidylinositol-3-phosphate 5-kinase activityInterproscan
GO:0012506
all species →
Cellular Componentvesicle membraneInterproscan
GO:0030593
all species →
Biological Processneutrophil chemotaxisInterproscan
GO:0031410
all species →
Cellular Componentcytoplasmic vesicleInterproscan
GO:0032438
all species →
Biological Processmelanosome organizationInterproscan
GO:0052810
all species →
Molecular Function1-phosphatidylinositol-5-kinase activityInterproscan
GO:0090385
all species →
Biological Processphagosome-lysosome fusionInterproscan
GO:1903426
all species →
Biological Processregulation of reactive oxygen species biosynthetic processInterproscan
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0035556
all species →
Biological Processintracellular signal transductionInterproscan
GO:0046488
all species →
Biological Processphosphatidylinositol metabolic processInterproscan
GO:0052742
all species →
Molecular Functionphosphatidylinositol kinase activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00921PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinaseEC:2.7.1.150
Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites cylindrica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites cylindrica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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