Gene detail

Detailed information of ENSZOFP00000011673.1 in Porites cylindrica

Genomic Location: chr14:9031590...9072359
NR annotation: no NCBI-NR hit recorded
Species Porites cylindrica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSZOFT00000014921

CTCATGGAAAATTTTCGTAACCTGGCCTGTTTTTGTATAACACTCACTGCCATGCATAATTTTCTGTTTGCAGATCCTGCTGACAACATGAAAGATCTCTTGAATCAAATCACCAGCAAGGAAATGTCAACTGCCAAACGAATGGGATATGTCAATAATTTTACCAAGGTAATGTATAGTACATGTAAAAACCTGTCAATGTTTGCTAGTCTccTTATGCTGCCCCTTGTTTCGACTGCCAAAGAAGTCAGAGCTGCAGGGTTACGAGCCTTCCGCCATCTGTTTTCCGATAGTAAAACTCTCTCCAAAATGCTGGACTTCAGGATTGACATATTTGTTGTTAGGTCAATGGATATGGTACATAGTGCTTTTGAGGTGGAGCGTGTTCAGGCCTTGAGGCTCATAAGAAAGgTGATTGCTGTTAGTCCTGAGTTGTTTCCAATGTCAATGGCTGCTGCTCTTGTTTCTGTTGGtaatgacgaaggagatgatgCAGATAGACTTCGAAGAGCTTGTGTTGCCACCCTCTGTGAACTTGCTGTAAAGAACATTACGACAGCATCTTACTGTGGGGGGATCAATACCATTATAAGGAACATATTGGATACTCAGTTGCCGCGATTTAACGAGTCTCTGATGGCAACGTTACTTTACCTGTTAAACAGCCCTGAGTCAAGGCTGTACATGCGATCAGATGTTGGATTAGAGtCCATTTTAGCACCCTTTACAGACCTTCATTACAGGCATAATCCTGATACTCCAGAAACACATTTAAGAGATGACAGGAACAACCGCTTACAAGCCAGCAAGATGGCTATAGTTACAGTTTTCAGATCTTGGTCAGGCATAATCAGTTTATGTCGGCCAGATGGAAAAGGTGTCCAGTCATTGTTGGGCGTGTTCTGTTTGCCAAACTCTGATGTCAGAAGAGGGGTTATGGAAATATTGTTTGAGATTTTCCAGCTTAAGGAACCTGATTGGACAGATGACTTTCAGCAAGCACTTGTTAGTGTTGaccCTTGTCAAATGCAAGATTCCTGGAAACTCTCTGAAGGATTTGTGGCAGAAGAAGGCAAAGCACTCTTGCCTCACCGTGCCACTGGAAGaaCAAACCTTGCAAAGAACTACATAGCCCTGGTTTTAGCTGCTTTCATAAATGCTGGACTGCTTGAGAGCCTTGTAGAGGTCATAACGTCATCTGATCCGTTCATTTCAGTCAGAGCCACCATTCTTTTAGGGGAACTGCTGCACTTGGCTAACACACTTCTCCCCCCAGAGTGTAGTAGCCATACACACTGTGTTCCCATGCTGGTAAACACAGCGTCTTTGTTTGAGGTCACAAGCGAGGAAAGAAGTCGTGCCAGTATAGCTGTTAACTGCTTGGACCGACTTCATCAGACCAAGAAACGAGGCCTTGTTCCATGCAGCCTATATCTTACCCTTATTACTTCCAAGGCTCACACGTTGGAACCAAAAGTCAAACCAGACAAGCTACACAGGGATCGACTTACAGCCTGCCTTAGTAAAGAGATTGATGATCCCATTTTTGCTACTCTGCGGGACACACAGGTGATGATGGAAAGAGATTTCAGGAACTGGGATTGGGATCTTATCGGGTCAACTCTTCAGtctCCATCTATTACCATGAGAAAACTGGAAGAAACTTCCAACCTGAAGTTCGTCCGTCACCTTCTGTACTTCTATAAGCCCAGCAGTCAGCGATTCTGCGTTGTTCACATATCAGACCCTCAAGCCAAAACATTCTCTGAAGTCGGATGCCTGCTTGTAGATTTCCTCATTGAAAATGAAGACCTTACAGAGGGACTAATGCTTCAAGAACTGGTGGTTGATATTGGTGAATGCCTGCAAGAGGTAACCTATGCTTTGTCTCCTAGCATCACAACCGGTGTCCTTAGTAACAACAATGTCCTGAGTACGCTTAGCAGAGATTACTTTCTGTTTCTTGGTAAAGTGGCGTGCACAAAAGGTGGCTCAAAACTGCTCGAGAGGACTGGAATATACCAATATTTGCTTGAACTTTGTTCCTTGCCGTCACGTGACAGCCTTCAGAAGCTGATCGTAGCTAGCCTGGATTACAGCCACAGTGGAATTCCCAGGATTATTTTATCAAAGATCCTGACGGCTTCCAGTCCGGCCACTCGACTGTATGCTACCAGTCATATGCGAGTTCTATTACGGGCGCGTGTCCTCTTCTTTCATAGCTGGGGCATTGAGCTACTTGTTACACAGCTTTATGACACTGACAGTGACGTTGCCATGGAAGCCGCTGACGTGCTTGACGAGGCTTGCGAGGATGAAGCAAATCTCCAGTACCTAGTAGAGCTAAGTCCTGTGCTACTTCATCTGGGCGATAAAGGTATTCGTCTTTTGACAAGGTTCCTCTCTGTGGAAAGTGGGCTGAAATATCTCAATTATCGAAACTATCTGATTCCCCTTATGGATCAATGGAGAATGCACTACAATAAAGCGTACGTCCACTGGGTAGAAGAACTACTGGCGGAGTCACTGACCTCATATGTCAAACAAAAAGACGAGAATACTTTTATAAGAAGAACAAACAAAAGAACGGTTGTAAAGGATGCTTACCTCCCTCCCCATCTGTACGGCCAGTTAGTTCAAAAGAAAAGTGGATTCAAACTTCTTCAGAAAACTAACGATGTCGAACTGTTAGTTAGCACACTACAAACAGTCGAGCCTAAAACAAGAGAAGACGTGTTGGAAATCAAGGCCGCTCTATGGGCTTTGGGACATGTCGGCTCTACTAATTGGGGTATCAACTTTCTTGTGGAGGAAGCAATCGTTCCATTGATTGTAAGTCTGGCAGAAGAATGTGAAAATTTTACCATAAGAGGAACGTGCTATTACGTCGTGGGTTTGATCGCCAAAACTCGTGAAGGCACAGACATCCTTCATGATTTAGAATGGGAGAGTATTCGACACATCGGCGAAGACGCGTGGCCAGTCGTAGAGACGTCAATCGAAAACAAGGAGGAGGTTATCCCCTTCGGACATATCCGTGGGGAATCGCTGAGCACTCCGGTCTCGGGTTCATCGTTTAGTAGCTACCCGTTCGGCGCTATGACCGAGACTGATCGAGCCGGGGGAATATACCTCGGGGAGGAGAACAAAGACACAGAGGGATCCACTGCGTATGACAAATTGAGCGGGATTTACCTAGGAGAGGACAAGGGGCCTACCCGCAAAGCATCGCGTGATGATTCAAACGAAGGTGGGATTTTATCGCAGTGGTACAAAAACGCTGAAAGGATGAGGAAGATCGTGACACGTGAGCGCGGACATTATGATGAAAGAAGTGGAGTCTACTTAGGAGAGGACTCTTCAAGTGCCACGCCTCCGAGTGATGGGATCCAACTCCCCGCCCCCGGAGGGATAATGGAACGGCTTTTCGCCGAGTCTGGCTTTGACATCAATATGCTGACAAACAGGGAGTCAAAACTGACGCATAAAAGGAATTTCAGTGAGGGAAATTTCATAGGCGGTAGTTTCCGCGAGAAAATGGCTCCATACGAGAGATTTGAGAGTAAAAGAAGAGCGCATTCTAATGTCGATCGGGTTCCACCACCACTACAAACCGTTGGAGAACATACTGGTGGTGATCTTCTCTCGCCGAATAATCATGGACTTGTGCCTTCTCATAAACACACCGTGAGTGCTCCTTGTGAAACGGATTTGAGTCGCGTGGATAAAATCCTGTCGGAGACCTCTTCGGACTCCGCGATTAAAATGGATATCCGGCGCCGTAGTGACAGCGAAGCAACTGACTTATCTACCCCAATATCTATGCACGTGCGGTCTGGAAGTAATCTAAGTAGTGCTAGTATGGACAGCGGTGATTTTCTAGAAATGTACATTTCGTCACGCAGCCGTGCTAGTAGCAGCACGAGCGAGCCTGGGGTTTATTTGCAGACGAATAGTCCAACTAATCAAAGTTTAATGAGTATTGCATCAGATGACACTTCAAAGACTCTTGATGATAAAGATCGACCTCTGAACTCTTCTGGAGAGAGCTTCCAAGGCGTTCTTTCTTTAGAGTCCCCGCCCTCGGGAACACTTGTGCGGGATGCAGCCCGCAGCTCGAGCCCTTTAGGGAATGGCATCCAGAAAGAAGAGCGCAAGAATTTCCCAGGAGCAGAGCGATTGCAGAATGAACTTGAATCACGGCCAAGGAGTTTGAGCTTTAATGAGAAACGCCGCATGGGGAGCCCGTCCCTCGGGATGATACCCGAGACCCGCAGCTCTAGTTTTAGCGGGAGCACGGAATTCTCTAAAATTGCCACCAAAAGTCGTTCGAGTACCGTTCCCGAGTTGACTCACGTTCCACCAATGGAGAATTTAAACGATTTACAAGGTAGCTCCAAAAGCTTAGCCGAAGTGAAGATCTTAAGCGATAAGACGATTGTGTTCCGTGCGAGCAGCGACCCTAAAACAAGGGCCTTGAGTGTAGACAGCGCAAGCACGAGTGGACTGAGACGAGACCGACTTTTAGCAAACAGCAGTCAGCTTAGCTTAGATGAGTCGGACGCCAGCGTCTCGCGAAGTCGAGGCAGTTCCTTTGAGAAAGCGGAGGTTGCAAGGAAACTGGGTCTTAAATCCGGGGATTTGTCGCCCGCTAAGCGCACGCGCAGTACGAGCAGCGGAAACTCATCAACTGATGGATATTCTTCGAAAaggattttgaataaaaacAAGCTGTGTAGCTCTATTGAAAACATCACGGTGGTCTCGGGCGATACACGCAGAAATTCATGCGCGAGCCCTGAACAGTCACTGTTTACAAGCTCAAGGAATGCTTTTGGTTATACGGCGTTAAGTACGCTACGGCGTCAAAGAAGCTTTAACCGTGAATTGGAAGCTAAAGTAAATGCTTTCGGTGCCGCAAGAACAGGCTATGCAATATCCCGCTCCATGTCTGCCGTGGAATTCTCTTCATACAGTAACAAGCGTGACAGTTTGGCAAGCATTTCCAGCGCATTTGATTACCGGCAGTTTACACCTTCAAGCAAAAATACCGTTAATGAATTCCTTGGTCTTAGTCTCCCTCTAGATCTCAGCAGGCTCTTCCAGACAGAAGCGTACGAGTTTCAAGGCTCTTGGCCTGACCACTTTGTTTCTACCCCCACCCTTATGCCACCAATCGTCGTACGCAGTAAGGAAGGAGAAAGCCACGATCAATCCCGCTGCCTTCACTGCATGCACTCGAGCAGGGTGGGGCCTGGGAGAGACAGGAGCAAGTCATCTGAACACGTGCTTGATGGAGAGTGGAACAGGTTAACGCCCGTACTGGAAGCAAAGtTTGAAAATACCGATTCAGCAAGCGAGTGTTCGTACATAGCATCCACTGCGGATTCCACTTTGAGTGTAACCAATCACACCCATGTAAACAAGAGCAAACTGGATGAAAACACGCCTGAAGGAAAACGGATGATTCGCGATGAAATCCTGAGACTTGTAGCATCGCTCAGCAGTGTAGTGGGCTCCAGATCACACCAGGAGGAGCTGTCTAAGTTAAAAGAGAGGTTCCCACATATGTTTCAAGACCTTTGCTTGTACTGTGAAGTATCAGACGTTCTTGGACTGTACAAGTTTAGACTGCACATCCGGAGATTTGTTCAAGGGCTTTTTGCAAATGTCATCTTTGATCCGaTAATCGAGCAAGCAGACTTCGTGATAAACAGAGAACGAAAGAATTCCACCTCTGAATCATAA

Transcript

ENSZOFT00000014921

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003125 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14663 all species →	RasGEF_N_2	Rapamycin-insensitive companion of mTOR RasGEF_N domain	Domain	Interproscan
PF14664 all species →	RICTOR_N	Rapamycin-insensitive companion of mTOR, N-term	Domain	Interproscan
PF14668 all species →	RICTOR_V	Rapamycin-insensitive companion of mTOR, domain 5	Domain	Interproscan
PF14666 all species →	RICTOR_M	Rapamycin-insensitive companion of mTOR, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028268 all species →	Family	Pianissimo family	Interproscan
IPR029452 all species →	Domain	Rapamycin-insensitive companion of mTOR, domain 5	Interproscan
IPR029453 all species →	Domain	Rapamycin-insensitive companion of mTOR, domain 4	Interproscan
IPR028267 all species →	Domain	Rapamycin-insensitive companion of mTOR, N-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR029451 all species →	Domain	Rapamycin-insensitive companion of mTOR, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13298 all species →	CYTOSOLIC REGULATOR PIANISSIMO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031929 all species →	Biological Process	TOR signaling	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0038203 all species →	Biological Process	TORC2 signaling	Interproscan
GO:0043539 all species →	Molecular Function	protein serine/threonine kinase activator activity	Interproscan
GO:0051897 all species →	Biological Process	positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08267	RICTOR; rapamycin-insensitive companion of mTOR	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites cylindrica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites cylindrica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →