Gene detail

Detailed information of ENSZOFP00000015844.1 in Porites cylindrica

Genomic Location: chr2:152832...171983
NR annotation: no NCBI-NR hit recorded
Species Porites cylindrica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSZOFT00000019793

TACCAGTTATCGTGCTTGTGCAGGGGAGTCGCAATTCCAGCATCCATTAGCTCTTTGATAAGTCCCTCGTTTTCTTCTTTGGATCCATCGCAGACGTGAAGGTTGTCGGGCTGACAGAGGTGGATTTTGTCTGCCACAAAATCCTGCACCTTAACAGGGTGATCCTTGTCAAATGTCACAAGTGTTTCTTGAAGACTTCTCTAAGTATGGGACTTTTATAAATGGCATTAGAATCACCGGGACAGTTAATGTGAAGAGTGGTGATGAATTATTATTTGGAAAAAACAACAGTCTCTACAGGTTACAATATATTCCCTTGGTTGTTGTCACCTCTTGTCTtgatgagaaaaagaaaaatacgcTCAAGAGTCATGTTCTTCAACTTGGTGGTCATATGATCAATGACTGGAGGGCAAACACTGTAACTCACCTGGTAATGGATGGACTGACATTTACTATAAAAGTGATTCATGCTTTAGCTGAGTGTTGTCCAATTGTCACACCATCCTATTTTGATGACATTATAAATTCTACTAATGCAGGTCCAGCTCCTCTCCCTGTGGAAAGCAGCTACCTTCCACCCCTAAAGGAAGAGACTATTAGTTCTCAAGGTGCAAGTTTTCTTCCCAGGGAAGCCAGAAAATCTTTGTTCCATGGCAAAACCTTCATCTTTATCAGTAAAAAGCAGTACAAACGGTTGCAGAATGCAGTTGGCTCAAGTGGTGGCATTGTTTTATTGAGGGATGTACCCGGAAGTGAGAGTGATGATGGTCTGGTATCTAAAGATATTTGTGTTATGATGATGGATAGTAAAGAACAAAACTCATTGCCAACAGAGTCTCAAAAGTGGGTCTTACATGTAGTTGAAGCATTGAGAAGACATGGATGTCGTCCTATCCCAGAGTCTGAGATTGGCTTAGCTTTGCTATTTGTGTCATTGGACAAGTATTGTAATCCAAGTATTACTGCTGTTCCAACATTAACACAAAATCTTGTCAGCCAGTCTTTCCAAGCTGCAGATATAATGTCACAACAGATGGTAGCCAATTATCCAAAGTTCAAAAAACCAATCACACCTGTGAAGCATGTCAGACAGGACAAGAGTGAAAGTGTTAGTTCTGTGAAAGAAACTGGCCTGGCCAGCACAACTGTCCACAACTCCTTGAAGACTAAAagATGCAGCACAAGCACAAGTGAGCCGGATGTTATTAATGAATCTCTTCCTGAAAGCCAAACTGACAATCAAGAAAGACCACCATCAACTAAGAGAAGGAAGCTACTTGAGCCTGAACAGTCGCCTATAGGACGGTCAGCAGAAACAGCCCTGGTACCAGATTCAATAGATATTAACAAATCAACGGACGAAACCCGCAGTAACCTTCAGCTCAAACTTGCTGTGGCGGACAGTTTGGTTGCCGATAGCTTAGAGATCAAGGATGGCACTGATTGTGAAAATGATGAAGAACCAAAAGGAACTGAAAATATTGGACATGAAATGATCGCTGCAATTAAAACGGAAAATATTCCTGATAGTTTGGATGGTAATCCGGATCACTTCATTGCTGATGAAACTGCAGATACTAAGAGAAAGCCGGGAGATGCCCAGCctgaagaaataaaaattcaCGTACAGCAACAAGaaactaataaagaaaatagACGCTGGCCTGTGAATGAGCAGCATTTTGATTCGAGACATGTTCAAGCTGGATTTCTCTGCTCTAAGATGCCAAGAAAGGTGGTTAAGGAAACCTGTGAAGATGGAGATGCTCATTTGCCTCGCGACCTTTTTGTTGTTGAACAAGTGTCGTTAGTAGTTCGCAGGCCAGCCAATGTCGCACCTACTGCACCGAAGAGACCAGGAAATACCACTGTCAAAAACTTCAAGAAATTTGCAAAGCAAGTTTATCCAGGTTCCACTGTTAGTCTTCCGCGCATTATTGGTGGCAGTGATTTGGAAGTTTACCAGTCTTCTGATAGGTTGGAGAGGGACGAGTGGTTCCTGGAAGCTAGAGAGGTTGATGCGGAACGTCAAAGAGAGGAGAGGCGAGCAGAGGAACTGTTTAGgtgGGAGGAGAGGccagttaaaaaaagaaaaactaaaagatGAACGCCCGGCAAGTTCATCACATCAGTGCTCTTTAGACTGCAGACAAAGATATTTAGTTACAAACTGTAAATAAGAAATTATAAACCAATATTGAGTTGGTCTTGCTTAAAGCTTGATCGGCCTTCTTTTTCAATATGTTTTGCTCTAGCGACTGGTTTCTTTTAACGCTGGTTGAGGAGatttctctctcttttcttttgtttgagtTTCCGCTCCAGTAAATGAAATTGCAAGCACAAAACAAACAGTTGTGCGCTTACCGGTGCTCTATCTGGCGATAATGTTTTAATAAAACCCAAATTTTTGaatttgtcatttgtttcttcAGTGAGGATGGGTATATGTTCTTTTGTTGCCACCGTGATATTTTGCTTCGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004927 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF08599 all species →	Nbs1_C	DNA damage repair protein Nbs1	Family	Interproscan
PF16508 all species →	NIBRIN_BRCT_II	Second BRCT domain on Nijmegen syndrome breakage protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR013908 all species →	Domain	Nibrin, C-terminal	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR040227 all species →	Family	Nibrin-related	Interproscan
IPR043014 all species →	Homologous_superfamily	Nibrin, second BRCT domain superfamily	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR032429 all species →	Domain	Nibrin, second BRCT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12162 all species →	NIBRIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10867	NBN, NBS1; nibrin	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites cylindrica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites cylindrica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →