Detailed information of ENSZOFP00000018152.1 in Porites cylindrica

Genomic Location: chr3:54211750...54285682
NR annotation: no NCBI-NR hit recorded
Species Porites cylindrica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001659 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02260
all species →
FATCFATC domainFamilyInterproscan
PF00454
all species →
PI3_PI4_kinasePhosphatidylinositol 3- and 4-kinaseFamilyInterproscan
PF20175
all species →
Tra1_centralTra1 HEAT repeat central regionRepeatInterproscan
PF20206
all species →
Tra1_ringTra1 HEAT repeat ring regionRepeatInterproscan
PF02259
all species →
FATFAT domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000403
all species →
DomainPhosphatidylinositol 3-/4-kinase, catalytic domainInterproscan
IPR014009
all species →
DomainPIK-related kinaseInterproscan
IPR003152
all species →
DomainFATC domainInterproscan
IPR046807
all species →
RepeatTra1, HEAT repeat central regionInterproscan
IPR046805
all species →
RepeatTra1, HEAT repeat ring regionInterproscan
IPR003151
all species →
DomainPIK-related kinase, FATInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR050517
all species →
FamilyDNA Damage Response and Repair KinaseInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11139
all species →
ATAXIA TELANGIECTASIA MUTATED ATM -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0000124
all species →
Cellular ComponentSAGA complexInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006281
all species →
Biological ProcessDNA repairInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0035267
all species →
Cellular ComponentNuA4 histone acetyltransferase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08874TRRAP; transformation/transcription domain-associated protein-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites cylindrica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites cylindrica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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