Detailed information of ENSZOFP00000018704.1 in Porites cylindrica

Genomic Location: chr3:53135453...53164131
NR annotation: no NCBI-NR hit recorded
Species Porites cylindrica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002067 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628
all species →
PHDPHD-fingerDomainInterproscan
PF01429
all species →
MBDMethyl-CpG binding domainDomainInterproscan
PF00439
all species →
BromodomainBromodomainDomainInterproscan
PF15612
all species →
WHIM1WSTF, HB1, Itc1p, MBD9 motif 1MotifInterproscan
PF15613
all species →
WSDWilliams-Beuren syndrome DDT (WSD), D-TOX E motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR036427
all species →
Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR019787
all species →
DomainZinc finger, PHD-fingerInterproscan
IPR001739
all species →
DomainMethyl-CpG DNA bindingInterproscan
IPR018501
all species →
DomainDDT domainInterproscan
IPR001487
all species →
DomainBromodomainInterproscan
IPR037374
all species →
DomainBAZ2A/BAZ2B, bromodomainInterproscan
IPR028942
all species →
DomainWHIM1 domainInterproscan
IPR018359
all species →
Conserved_siteBromodomain, conserved siteInterproscan
IPR011011
all species →
Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR019786
all species →
Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR001965
all species →
DomainZinc finger, PHD-typeInterproscan
IPR016177
all species →
Homologous_superfamilyDNA-binding domain superfamilyInterproscan
IPR028941
all species →
DomainWHIM2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45915
all species →
TRANSCRIPTION INTERMEDIARY FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0000790
all species →
Cellular ComponentchromatinInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K26167BAZ2B; bromodomain adjacent to zinc finger domain protein 2B-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites cylindrica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites cylindrica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP