Detailed information of ENSZOFP00000029071.1 in Porites cylindrica

Genomic Location: chr6:1735363...1738192
NR annotation: no NCBI-NR hit recorded
Species Porites cylindrica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001930 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06068
all species →
TIP49TIP49 P-loop domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010339
all species →
DomainTIP49, P-loop domainInterproscan
IPR042487
all species →
Homologous_superfamilyRuvBL1/2, DNA/RNA binding domainInterproscan
IPR027238
all species →
FamilyRuvB-likeInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR012340
all species →
Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11093
all species →
RUVB-RELATED REPTIN AND PONTINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0000492
all species →
Biological Processbox C/D snoRNP assemblyInterproscan
GO:0000812
all species →
Cellular ComponentSwr1 complexInterproscan
GO:0003678
all species →
Molecular FunctionDNA helicase activityInterproscan
GO:0006338
all species →
Biological Processchromatin remodelingInterproscan
GO:0006357
all species →
Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008094
all species →
Molecular FunctionATP-dependent activity, acting on DNAInterproscan
GO:0016573
all species →
Biological Processobsolete histone acetylationInterproscan
GO:0031011
all species →
Cellular ComponentIno80 complexInterproscan
GO:0035267
all species →
Cellular ComponentNuA4 histone acetyltransferase complexInterproscan
GO:0097255
all species →
Cellular ComponentR2TP complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSZOFP00000029071.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites cylindrica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites cylindrica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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