Genomic Location: chr8:30692339...30706461
NR annotation: no NCBI-NR hit recorded
Species Porites cylindrica · all data for this species · gene families
| CDS |
| ENSZOFT00000044533 |
| Transcript |
| ENSZOFT00000044533 |
| Protein |
| ENSZOFP00000034671.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003241 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00382 all species → | TFIIB | Transcription factor TFIIB repeat | Domain | Interproscan |
| PF08271 all species → | TF_Zn_Ribbon | TFIIB zinc-binding | Domain | Interproscan |
| PF07741 all species → | BRF1 | Brf1-like TBP-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013150 all species → | Domain | Transcription factor TFIIB, cyclin-like domain | Interproscan |
| IPR013137 all species → | Domain | Zinc finger, TFIIB-type | Interproscan |
| IPR013763 all species → | Domain | Cyclin-like domain | Interproscan |
| IPR011665 all species → | Domain | Brf1, TBP-binding domain | Interproscan |
| IPR000812 all species → | Family | Transcription factor TFIIB | Interproscan |
| IPR036915 all species → | Homologous_superfamily | Cyclin-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11618 all species → | TRANSCRIPTION INITIATION FACTOR IIB-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0017025 all species → | Molecular Function | TBP-class protein binding | Interproscan |
| GO:0000126 all species → | Cellular Component | transcription factor TFIIIB complex | Interproscan |
| GO:0000995 all species → | Molecular Function | RNA polymerase III general transcription initiation factor activity | Interproscan |
| GO:0001006 all species → | Molecular Function | RNA polymerase III type 3 promoter sequence-specific DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006352 all species → | Biological Process | DNA-templated transcription initiation | Interproscan |
| GO:0006383 all species → | Biological Process | transcription by RNA polymerase III | Interproscan |
| GO:0070897 all species → | Biological Process | transcription preinitiation complex assembly | Interproscan |
| GO:0097550 all species → | Cellular Component | transcription preinitiation complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15196 | BRF1, GTF3B; transcription factor IIIB 90 kDa subunit | - | Transcription machinery | ko03021 | deepkoala |
Genes whose expression across the transcriptome samples of Porites cylindrica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites cylindrica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
