Detailed information of ENSZOFP00000035865.1 in Porites cylindrica

Genomic Location: chr9:25967355...26042163
NR annotation: no NCBI-NR hit recorded
Species Porites cylindrica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001592 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595
all species →
PDZPDZ domainDomainInterproscan
PF17838
all species →
PH_16PH domainDomainInterproscan
PF09128
all species →
RGS-likeRegulator of G protein signalling-like domainDomainInterproscan
PF00621
all species →
RhoGEFRhoGEF domainDomainInterproscan
PF00130
all species →
C1_1Phorbol esters/diacylglycerol binding domain (C1 domain)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036034
all species →
Homologous_superfamilyPDZ superfamilyInterproscan
IPR000219
all species →
DomainDbl homology (DH) domainInterproscan
IPR001478
all species →
DomainPDZ domainInterproscan
IPR016137
all species →
DomainRGS domainInterproscan
IPR035899
all species →
Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR001849
all species →
DomainPleckstrin homology domainInterproscan
IPR041020
all species →
DomainARHGEF1-like, PH domainInterproscan
IPR002219
all species →
DomainProtein kinase C-like, phorbol ester/diacylglycerol-binding domainInterproscan
IPR036305
all species →
Homologous_superfamilyRGS domain superfamilyInterproscan
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR015212
all species →
DomainRegulator of G protein signalling-like domainInterproscan
IPR044926
all species →
Homologous_superfamilyRGS, subdomain 2Interproscan
IPR046349
all species →
Homologous_superfamilyC1-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45872
all species →
RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM DInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005085
all species →
Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0001664
all species →
Molecular FunctionG protein-coupled receptor bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0007186
all species →
Biological ProcessG protein-coupled receptor signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07532ARHGEF12, LARG; Rho guanine nucleotide exchange factor 12-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites cylindrica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites cylindrica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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