Gene detail

Detailed information of EVM0001715.1 in Myxobolus honghuensis

Genomic Location: Contig01114:197550...206421
NR annotation: KAF0991908.1, hypothetical protein HZS_473 [Henneguya salminicola]
Species Myxobolus honghuensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

EVM0001715.1

ATGGATAGTTTTGAAAATATCCCCCCTGAGAATGAGAAGTCAAAATGCGTCAAATTTCCTAAAAGCTCTAAAGAAGTTCCCGCTTGGCTTGAGACTGTTAAAAGGAAATGGTACGGTGCTCAGGAAGTTACAGAAAATGTTTCAACTCCCAAAATAGCAAAAAAATCTCTCACTTTACAGTCGTTGTTAAATGTTGATCAAAATTCTCTTCTAACTCATCCATGGAAAATTATTCAGATTCGGGAATCGTCATATGCTGGAATTTACAATACTTGGGTTTATTGCCAATCAAAACTACATCTTATCAAAATTCAAGTGCCAAAAATATTTTATGTGAACTCAAAAGTGCCTAAAACCAAAACCTCCAGCAAATTTCGAAAAGTAACCAAATTCCTTCCTCGTTCTAAAATCTCCTATAATTTATTCGAATATTCCATCGAGGAAACCAAATATTATAAGAATTATTTAAAAACGGCCGCTCTAAGCGCCAGTTCTATCGTGGAGGGCGTTTATGAAACCCAAACTCCCTCAATTTTCAGAATGATATACACCTTGGGAAACCAATGCAGAATGACCGAAGAAGCCAAAAATGAAATAAAAACAATCCCATCCCTATTCGCTTTCAAAAATCTAGAATTCATGAAATCTCCCACTCTTAATTTTCCCGCCACTGACTATATCCATATTCTTTACCTCAAAACACCATTATTAAAACTTTCTAGTTTCTACAACCCCCAATCCAAAGAAATTATTTTTTGTTTTTTCCTCACTAATCAAAAACTTTTTGGGGTCAATTTTCAAAACATCATCGAAACGGAATCAAAAAACATATCATCAAAAAATTTCAACGAAATTATTATTAAAATAGAAACTGATCAGAAAAAGGAAGCTAAACAAATATCTGATTATTTCTCTATACCACTCGGAAATCTTCCCGTCAACGATTTTCAAATTTACGGCTGGGATATTCTCTTTGCTAGACAATTAACCAATAATCATATGGTTCTATGGACTAGCTCATCCCAGAATCCTGATTTTGGGAATTCCTCTGAAATGTTTCTTAATTATAAAGAGCTTGATTATACCATGAATTATGATAAACCAGGATTTTACTCAACTTTTTGTGTTGAATTTCGATTAGAAGGCTTAGCTGTTGATTCTTTACTAAAAGTAAATCAACTTTTATATCTAATCAACAACTCGGATAGGCCAGAAGGAACTTTTAATGAAATACAATCTGCATCTCTGGGGCAGAGTTTGACTAAAAACAAGCCAATCGATCAGATCCTTCTAACCGTCAACGATACCGCCTCCTGCGCATCAGCTTTTAATACTTTAAAAACGATAGTTATAGAATGTATGAAGCAGGTGAATAATGACCAGAATATTATGGCAGATCAACTTCTAGTCCATCTTTATAGATATTTATGTTCAACTAGAACTTTATTATACGATCCTGGTTTATGTAGATTTGTTAGAGATATAATGAATAAAATTTTAGACCAGCTTTTAACTGCTTTCGAGAAATTGAATGCTAAAGTTATTCATTTGGATTTTCATAAAATTGTTTTGAATGTGAATAAATTGGATTCAGCTCATGGTTGGTATAATATTAAAAATGTTGTGTCGTATATTTTGAAGCAAGAGATTTTCACCTATATTACTTTTATACCGACTTCATCGTGGCATAATTTGTTCTGGATTGATAAATATGACTATGGAGGCGTGAAATGTGAAGTTCCCAATTGTTTCAAAAACGGAATTTTCGTTGAAGATGCTGTTTTAGAACAAGATTCTTCTATGAATGTACGAATTGTTTACCAATTCGAACGAAGTATAACGAAAAAACTAGTCCCCCATTCTACTGCCAATTCTAATCAAACTCTCAAACTCGTTAAAATTCTCTGCGAAGTTTTTTCACATGATAATGATATAAAAGGATACATAGAACATTTAAGGTTAAATATTTATTTAAAATAGATCTAATTCGGCTAAAATAATTGGAATAAGCGAATATTCTGATGATGTTGTTAAACCTTTAAATAGACCATCATATGTCATTCCACAAGTGTTTTGTTCAAACTGCAACGATTGTAGAGATATAGATATGTTCAGGGATCTTCATATACAGTTTGATTCTAACAAAATTCCTTTTGTGAAATGCGATCAGTGTTTTGCGATTTATGATAAAAATGAGTTGGAACAGTCTCTTCTGAACATCGCCGATTATTCGATTCGGTCGTATTTGTTGCAGGATTTGAAGTGCAAAAGATGCAAATCTATCCGAACTTCGAATCTTTCAAATATCTGCACTTGTGGATGCAATTTTGAGCTGACACTTGATAAAACTACTCGAGAAACTCTGAACAGTCTTCATGATCTCGCCAAGTAAGGTCTATTTTTATAGATTTTATAATTTTAACAATCTTTCTTCTTTGCTCGATTCATTTTCTATAAGAAAACGAGCATCGACTATTTTGACTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07864	DNA polymerase epsilon catalytic subunit A OS=Homo sapiens OX=9606 GN=POLE PE=1 SV=5
F4HW04	DNA polymerase epsilon catalytic subunit A OS=Arabidopsis thaliana OX=3702 GN=POL2A PE=1 SV=1
Q6CUS7	DNA polymerase epsilon catalytic subunit A OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=POL2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002978 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08490 all species →	DUF1744	Domain of unknown function (DUF1744)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013697 all species →	Domain	DNA polymerase epsilon, catalytic subunit A, C-terminal	Interproscan
IPR029703 all species →	Family	DNA polymerase epsilon catalytic subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10670 all species →	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006272 all species →	Biological Process	leading strand elongation	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006287 all species →	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0008622 all species →	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0045004 all species →	Biological Process	DNA replication proofreading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for EVM0001715.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.