Gene detail

Detailed information of EVM0004069.1 in Myxobolus honghuensis

Genomic Location: Contig00221:2211240...2235008
NR annotation: KII73432.1, Ero1-like protein [Thelohanellus kitauei]
Species Myxobolus honghuensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

EVM0004069.1

ATGTCTCACGCAACACCCATTGTAAAAAAAGACGAAGAAACGAAAGAAGCTTTTCGAGTGGCACAAAGGGTTGACCGTGATTACGGTTTCAGTTCGCAAGGGCAAACTGGCTCGAATCATGGCCGTCCAGTACGCATGACAAGTGTCGATCGGTCTAATACTCGGGGGTTCCCGGAAAAAGTCGGTGGACAGTTTGGTGGGGATAGGAATCGCTTAACTCGCTTTAACAGAAGTTATTCCTCCTCCAGCGAAGTGCCGCCAAGAAATCTAAATCACGAAAAATTATTATTTCAGCGCGGGGAATCTGTTATCGATTTTACTGCATATGATGCGATTCCTGTACAGGTTGAAGGACCGAAAATTGACCCTATAGAAAGCTTTAAAGATATAGATTTTGGTGAAACTATAAACCTTAATATTCAGCTATGTGGATATGATAAGCCTACTCCTATCCAAAAACATTCACTTCCATATCTCATGAAAAGAAAGGATTTAATAGCATGCGCTCAAACAGGTTCCGGAAAAACTGTGGCCTTTTTATTACCTATAATTCAATCCATAAAAGATAGAGTTAACAATAGATTTTCGAATAGAAACGAACCCTATTCGTTAATACTTGCTCCCACTCGCGAACTTGTCCAACAAATTGTCACAGAAGCCAAAAAACTTATATACAGAACAAATATTAGAGTCGTTGGAATTTATGGTGGTGCCCCACATACTTCTCAACTAAAACAGATATCTTATGGCTGCCATATTATGGTAGCTACTCCCGGTCGATTAATAGATTTTATCACTTCCGGCCATTTTGAAATGCGGGATTGCAGTCATCTGATCGTCGATGAAGCCGACCGAATGCTGGATATGGGGTTTTTCCCCCAAATTAAGCAAATCCTCAATATTAGCAAAATGCCGAGTGGACCAGACAGACAGACTGTCATGTTCAGCGCAACTTTTCCCAAAGAGGTCCGAGATTTAGCCTCTAAATTATTACAAAATGAAGTCAAAATAACCGTGGGAAGTGTGGGATTCAATTGCGAACAAATTCACCAAGAAGTAATCTATATGGACCAAGATGACAAGCCTCAACGTCTTATTAATATTCTGAAAAAAATTACTGCCGAAAATGACAATGCCCAAATTTTGGTTTTTGTTGATAGAAAAAGAGTCGTGGATAAAGTGGAAATGGATTTATATAAACAGGGATTCAGAGTAGTTTCTATTCACGGAGATCGTTCGCAGAATGAGAGAAATGAGGCTTTGAATTTATTTAGAGCGAAGAAGGCACAAATTATGGTGGCTACAGATGTGGCTTCGCGAGGAATCGATATCCCTAGCGTTTCACACGTGATAAATTATTCTTTTCCGGATCAGATTGAAAATTATGTTCATAGAATAGGTCGTACGGGTAGGTGCGGAAATACAGGAACTGCCATTTCTTTTTTCACCTCCGAAGATGGTTCACAGTCAAGCCAGTTGGTTAAATTATTGAGAGAAAATAAACAGGTTATACCGGATTTTTTACATTCAATCCGACCGTTTACAAATTCCCGCCAAAATTCAAGAAAGGTTAAAAATTTGCCAAATGAAATGATATTCGAGTGGATTCAAACGATTGAATCATTTTTGAAATATATCACGAAAATCTTGCGTCAAATGATGCTTACACCCTTTTTGATATTTTCCACATTCCTAGGAATCCAATCTGCGTTTTTCGACTCGAATTTCGCGTCAGGACAAGAATGCGAATGTGTGGCTTTAAAAGAGGATTGCTGCAGTACGAAAAATATGGAAATATTTAATAATGAACACATTTTCCCAAAATTGAATGAATTGGTGGTGACAGATTATTTCAGATTCTACAAGATTAATTTAAATCGGGAATGTCTTTTTTGGCCAGACCAGAAAAAATGTTTACAGAAAAATTGTAACGTGGATCATTGTACTGAAGACGAACTTCCTCCCGCCTTTAAGAATAACAATGAGAAGGGGGACGAAACTTGTTCTAGCGGCTCGGATTTGTATCTACATAATGTGGATACTGAATTGAGTGAATCTCAACAAAAATTCGTAGAAAACTATCCATTTGATTATGAGGAATCGATTGATTTTGTGGACATCAAAGATTATATCGAACAATCCCAGTATGTTGATCTGGTTAAAAATCCTGAAAGATATACCGGATATTCTGGAAGCAGTTCTGCCAAGGTCTGGAATAGCATATTCCAAGAAAATTGCTTACAACTAAAATCTAAAATTTCCAAAACTGGAGCTGACGAGTCTTGTATAGAATTTAAAGCAAGTTCCAGACTGCTCTCTGGGTTCAGAACCAGTGTCGCTATTCACCTTAGTTCAAGATACCCTATGGAAACCTCGAAATTCGAAGTCTTCTGGGGGATAAATTACGAACAACTTCACAAAAGATTTTCGCCCGAGAACACGGGATCTAACGGTTCCCTCTGGATCAGTGACGTCTTTTTCGCATACTCCCTGGTTACTCGTGCAATTCTAAAAGCCAGACCGCTTTTAACAAACGTCGAAATTCACACTGGCGTTCTGGAGAATGATAAAAAAACAAAAGAAGTTTTAGATGAAATTTTAAAAGTCGTAGAAAAAGTGCCGGGCACTTTTAACGAACAGGTTATGTTTACTGATTTAAAAACCAACCCTGAATTATTAGATGCTATTAGGACTACTTTTAAGAATATTTCCAGAATTTTAGATTGCGTGGATTGCGATAAATGTAGACTATGGGGAAAGATTCAGATGCAAGGATATGCAACGGCTTTGAAAATCCTTTTCACTCCTTTCAATAATTCTATTCAAAAGAGTATATCTCCCGCCGTTAAATTGAATAGAATGGAAATCGTTTCTTTGATGAATTTATACACGCGTCTTTCTACTAGTTTGAATTATCTCAGCCTTTGGCGTATATACTTGGAAAAAAATTCAAAGTCAAGATCTGAACTATAG

Transcript

EVM0004069.1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00571	ATP-dependent RNA helicase DDX3X OS=Homo sapiens OX=9606 GN=DDX3X PE=1 SV=3
P16381	Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1
O15523	ATP-dependent RNA helicase DDX3Y OS=Homo sapiens OX=9606 GN=DDX3Y PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04137 all species →	ERO1	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR037192 all species →	Homologous_superfamily	ERO1-like superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR007266 all species →	Family	Endoplasmic reticulum oxidoreductin 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0015035 all species →	Molecular Function	protein-disulfide reductase activity	Interproscan
GO:0016972 all species →	Molecular Function	thiol oxidase activity	Interproscan
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for EVM0004069.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.