Gene detail

Detailed information of EVM0006516.1 in Myxobolus honghuensis

Genomic Location: Contig00664:1254365...1265272
NR annotation: KAF1745400.1, hypothetical protein MXB_3699, partial [Myxobolus squamalis]
Species Myxobolus honghuensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

EVM0006516.1

ATGTTCGATTTGTCATCGGAAAACTCGATCAGACCAGATTCGAATTCTTATGATGCTAGTTTAACGAATCGTCCCGAACTTAAATATTCTGTTTTTGAATACGATTCTGAATTGTCGGTAAGAGAAGCGCCGCAAAGTTTAGCAATTGTTGTTTTACTTGACATTTCAACTATGAATGATAGTAGCTTCTTTTTAGAAACTTTTGCGCAGACTCTGAAAGCAACTTTATCGAAAATACCCGGCGGTAAACGATCTTCAATGGCGTTTGTAGCATTCGACTCTTTTATTCATATTTATAATGTAGTAAGCTTAAGAAATAAAAATTCTAACAATTCTACAGATCAAAATTATGAAACTATAGATTTTCGTATAGAACATTCTGTTATTACAGATTTGGACGAACCTTTTTTCATATCTCACGATTCTGAATTTTTCAGATTTAAAACCGATAAAAGATTTTCATTTTTATTAGATAATTTGCTTGAAGTTGTTAAATCTACTAGTTCAGCATTTATAAATAATAAATTCAGTGACAAACCGCATGCGTATGGACAGAATTTGCCATTCTCAGAAAATAATCGTCCTCAATCGTGTTTAGGTTCAGCTTTAGATTATGCGTCGAAATTATTGCATAAAACAGGCGGGGGTTTGATTGTGTCGTTCTTATTCTCACCTCCAACATTAGGTCTTAAAACATACACGCCAAGAAATCCACCCCCTTTTTCTACAGGAAAACAAGAAGAGAGCGTTTTTCTAACGGCGGCAACCGATGAATATCGAGAATTTGGTATGAAAGCTTTGGAAAATAATATAACTATTGATCTTTTCAGTTTCGCTTCAGAAACTATCGATATTGCTAATTTAGTTCCTATGTGCCAAATTTCTGGTGGGGATGTCTATGTGGGACCTAGTTTAGCAAAATCGCCATTCGAAACTAAAATCTGGTTAGCTAAAAATCTAGAAGTGTATTTTCTTAGATCTTTACGCTTAAATAATAGTATAAAAATCAGAATGCATTCCAGTTTCGAAGTTCATGGCTTTTTCGGACATTTTTTCACAAATTCCTTTAGTAAATTCGCTATTCCTGTAATGAGTGAATTTTCTACAATGGCTTTACACGTTATGATGGTCTCCTGCCCGCCAAAAGAGTTTCCTTATAACTGTTTTCAATTCAGTGTTTTATCGACTTGTAGCGATGGAATCCCGCGCTTACGAGTAGTGACTCTTTGTTTAAACCACACAGACAACATAGAGAGTATTTTCCAATCAATAAACTTCCCTTGTTTTGTTGGATTAATTTCGCGCATGGCAGTTGAAAGGGCCCTAAATTCCTGCATTTCTGATACAAAATCAGCAATATGTAACGCTTTAGTGGATATGATAAAATCCTACAGCGCAAAACGATTCGAAAATAACAGTTCATTTAATATGAATATTCCTATCGCTATCTACCAAACAGCCGTCCTATTATTCTGTCTACACAAAAACGATTGTTTCAGTATCTATAAAAATATAAAAATCGATAAAAGAGTTCAGAGAATCATCTCATTACGAAGTCAGCCTCTTGATTATCAAATCTCGATCCTTTTACCTGTTCTCTATTGTCTCTCCGATTTACTACAATGCGCATCTTTCCAAGAACCTTATTTTATTAATAACTACATGTGCTATAGTATTCCGTCGACGTATGAAAGTTTACAATCTGATAAAGTGTATATTTTAGATTCTGGTATCGATATTCATATTTATATTACTGCAAATGTTCCGAACAAGATTGTGAAGAATCTACTTGGCGTTGAGTCTGTGGAATTGATGCCTGATGTTATGATTACTCTGCCTACTCTTAACAATGAAATTAACAAATTTGTGATTGATTTTATAAATCTCGTGAGTAATTGTCGTCCATATAAACCTAATATTGTGATTTTCAACGATTCGTGTGCTGTCATGCGTGATAAATTCTGCAGTTTGTTGAAATTTGATAATACGGACAAAACTGGATCTTTCCGCGATTGGATAAAAGTTGTAAGGTCAAAATTACTAGATTCCTCACAGTATCCACGTTTAATAAAACCATATGACGAAAATGGAGATATTTTACCAACATTTATAAAACCATCTTTATCCTCCCCTTTTTCAACATTACCAAATTTCGCAAAAACGAAGCCGAGACATCAAAGATCTACATTAAAATTAACTGAAACGAAAACTCTGAAAAGAATAGTAGAATATAATCAACAACTTCGTCAAACTGAAAATCCATCTTACGCATTTATAAGTTCTAGAGGATCTACTCAATTTGTATTTCAAAGTCCTGAAATTTCTAAAAGGTCTTCGCAATGTAGTGCAGTTATAACAAAAGATGGCAAAAAATCAAAAGGGCCACAATTGCCATGCTTTTGCCATTGGCCAGATGTCGTCGCTGTTAATGGAAAATTAATCCCTGGGGATACATTGGGACTTTGTTCAAAAGACTCAGCTTGGGAAAAACCGAAGATTTTGAAAGTGACAAATATTCGAATTGCAAATAATGGAGAACATATAAAAGCTAACTGA

Transcript

EVM0006516.1

ATGTTCGATTTGTCATCGGAAAACTCGATCAGACCAGATTCGAATTCTTATGATGCTAGTTTAACGAATCGTCCCGAACTTAAATATTCTGTTTTTGAATACGATTCTGAATTGTCGGTAAGAGAAGCGCCGCAAAGTTTAGCAATTGTTGTTTTACTTGACATTTCAACTATGAATGATAGTAGCTTCTTTTTAGAAACTTTTGCGCAGACTCTGAAAGCAACTTTATCGAAAATACCCGGCGGTAAACGATCTTCAATGGCGTTTGTAGCATTCGACTCTTTTATTCATATTTATAATGTAGTAAGCTTAAGAAATAAAAATTCTAACAATTCTACAGATCAAAATTATGAAACTATAGATTTTCGTATAGAACATTCTGTTATTACAGATTTGGACGAACCTTTTTTCATATCTCACGATTCTGAATTTTTCAGATTTAAAACCGATAAAAGATTTTCATTTTTATTAGATAATTTGCTTGAAGTTGTTAAATCTACTAGTTCAGCATTTATAAATAATAAATTCAGTGACAAGCCGCATGCGTATGGACAGAATTTGCCATTCTCAGAAAATAATCGTCCTCAATCGTGTTTAGGTTCAGCTTTAGATTATGCGTCGAAATTATTGCATAAAACAGGCGGGGGTTTGATTGTGTCGTTCTTATTCTCACCTCCAACATTAGGTCTTAAAACATACACGCCAAGAAATCCACCCCCTTTTTCTACAGGAAAACAAGAAGAGAGCGTTTTTCTAACGGCGGCAACCGATGAATATCGAGAATTTGGTATGAAAGCTTTGGAAAATAATATAACTATTGATCTTTTCAGTTTCGCTTCAGAAACTATCGATATTGCTAATTTAGTTCCTATGTGCCAAATTTCTGGTGGGGATGTCTATGTGGGACCTAGTTTAGCAAAATCGCCATTCGAAACTAAAATCTGGTTAGCTAAAAATCTAGAAGTGTATTTTCTTAGATCTTTACGCTTAAATAATAGTATAAAAATCAGAATGCATTCCAGTTTCGAAGTTCATGGCTTTTTCGGACATTTTTTCACAAATTCCTTTAGTAAATTCGCTATTCCTGTAATGAGTGAATTTTCTACAATGGCTTTACACGTTATGATGGTCTCCTGCCCGCCAAAAGAGTTTCCTTATAACTGTTTTCAATTCAGTGTTTTATCGACTTGTAGCGATGGAATCCCGCGCTTACGAGTAGTGACTCTTTGTTTAAACCACACAGACAACATAGAGAGTATTTTCCAATCAATAAACTTCCCTTGTTTTGTTGGATTAATTTCGCGCATGGCAGTTGAAAGGGCCCTAAATTCCTGCATTTCTGATACAAAATCAGCAATATGTAACGCTTTAGTGGATATGATAAAATCCTACAGCGCAAAACGATTCGAAAATAACAGTTCATTTAATATGAATATTCCTATCGCTATCTACCAAACAGCCGTCCTATTATTCTGTCTACACAAAAACGATTGTTTCAGTATCTATAAAAATATAAAAATCGATAAAAGAGTTCAGAGAATCATCTCATTACGAAGTCAGCCTCTTGATTATCAAATCTCGATCCTTTTACCTGTTCTCTATTGTCTCTCCGATTTACTACAATGCGCATCTTTCCAAGAACCTTATTTTATTAATAACTACATGTGCTATAGTATTCCGTCGACGTATGAAAGTTTACAATCTGATAAAGTGTATATTTTAGATTCTGGTATCGATATTCATATTTATATTACTGCAAATGTTCCGAACAAGATTGTGAAGAATCTACTTGGCGTTGAGTCTGTGGAATTGATGCCTGATGTTATGATTACTCTGCCTACTCTTAACAATGAAATTAACAAATTTGTGATTGATTTTATAAATCTCGTGAGTAATTGTCGTCCATATAAACCTAATATTGTGATTTTCAACGATTCGTGTGCTGTCATGCGTGATAAATTCTGCAGTTTGTTGAAATTTGATAATACGGACAAAACTGGATCTTTCCGCGATTGGATAAAAGTTGTAAGGTCAAAATTACTAGATTCCTCACAGTATCCACGTTTAATAAAACCATATGACGAAAATGGAGATATTTTACCAACATTTATAAAACCATCTTTATCCTCCCCTTTTTCAACATTACCAAATTTCGCAAAAACGAAGCCGAGACATCAAAGATCTACATTAAAATTAACTGAAACGAAAACTCTGAAAAGAATAGTAGAATATAATCAACAACTTCGTCAAACTGAAAATCCATCTTACGCATTTATAAGTTCTAGAGGATCTACTCAATTTGTATTTCAAAGTCCTGAAATTTCTAAAAGGTCTTCGCAATGTAGTGCAGTTATAACAAAAGATGGCAAAAAATCAAAAGGGCCACAATTGCCATGCTTTTGCCATTGGCCAGATGTCGTCGCTGTTAATGGAAAATTAATCCCTGGGGATACATTGGGACTTTGTTCAAAAGACTCAGCTTGGGAAAAACCGAAGATTTTGAAAGTGACAAATATTCGAATTGCAAATAATGGAGAACATATAAAAGCTAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6CLE0	Protein transport protein SEC24 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=SEC24 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005601 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08033 all species →	Sec23_BS	Sec23/Sec24 beta-sandwich domain	Domain	Interproscan
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan
PF04815 all species →	Sec23_helical	Sec23/Sec24 helical domain	Domain	Interproscan
PF04811 all species →	Sec23_trunk	Sec23/Sec24 trunk domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012990 all species →	Domain	Sec23/Sec24 beta-sandwich	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR036175 all species →	Homologous_superfamily	Sec23/Sec24 helical domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan
IPR006900 all species →	Domain	Sec23/Sec24, helical domain	Interproscan
IPR050550 all species →	Family	SEC23/SEC24 family, SEC24 subfamily	Interproscan
IPR036180 all species →	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR006896 all species →	Domain	Sec23/Sec24, trunk domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13803 all species →	SEC24-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for EVM0006516.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.