Genomic Location: Contig01067:213702...223364
NR annotation: KAF0991083.1, hypothetical protein HZS_2857, partial [Henneguya salminicola]
Species Myxobolus honghuensis · all data for this species · gene families
| CDS |
| EVM0010242.1 |
| Transcript |
| EVM0010242.1 |
| Protein |
| EVM0010242.1 |
| UniProt accession | Description |
|---|---|
| P55201 | Peregrin OS=Homo sapiens OX=9606 GN=BRPF1 PE=1 SV=2 |
| B2RRD7 | Peregrin OS=Mus musculus OX=10090 GN=Brpf1 PE=1 SV=1 |
| Q7JVP4 | Bromodomain-containing protein homolog OS=Drosophila melanogaster OX=7227 GN=Br140 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004951 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10513 all species → | EPL1 | Enhancer of polycomb-like | Family | Interproscan |
| PF13832 all species → | zf-HC5HC2H_2 | PHD-zinc-finger like domain | Domain | Interproscan |
| PF13831 all species → | PHD_2 | PHD-finger | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013087 all species → | Domain | Zinc finger C2H2-type | Interproscan |
| IPR019542 all species → | Domain | Enhancer of polycomb-like, N-terminal | Interproscan |
| IPR050701 all species → | Family | Histone Modification Regulator | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR001965 all species → | Domain | Zinc finger, PHD-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR034732 all species → | Domain | Extended PHD (ePHD) domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13793 all species → | PHD FINGER PROTEINS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11380 | NTO1; NuA3 HAT complex component NTO1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Myxobolus honghuensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Myxobolus honghuensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |