Gene detail

Detailed information of EVM0014637.1 in Myxobolus honghuensis

Genomic Location: Contig00140:1536951...1537816
NR annotation: CAH0367940.1, unnamed protein product [Pelagomonas calceolata]
Species Myxobolus honghuensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55AB6	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1
Q9SYA6	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1
Q9VC49	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanogaster OX=7227 GN=Polr2L PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012250 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01194 all species →	RNA_pol_N	RNA polymerases N / 8 kDa subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000268 all species →	Family	DNA-directed RNA polymerase subunit RPABC5/Rpb10	Interproscan
IPR023580 all species →	Homologous_superfamily	RNA polymerase subunit RPB10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23431 all species →	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0042797 all species →	Biological Process	tRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for EVM0014637.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.