Genomic Location: HOLI00001:24505...25179
NR annotation: WP_009395004.1, MULTISPECIES: heavy metal response regulator transcription factor [Pseudomonas]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g49055.t1 |
| Transcript |
| HOLI00001.g49055.t1 |
| Protein |
| HOLI00001.G49055 |
| UniProt accession | Description |
|---|---|
| Q44006 | Transcriptional activator protein CzcR OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=czcR PE=2 SV=1 |
| I1WSZ4 | Transcriptional activator protein IrlR OS=Burkholderia pseudomallei (strain 1026b) OX=884204 GN=irlR PE=3 SV=1 |
| P0DMK7 | Transcriptional activator protein IrlR OS=Burkholderia pseudomallei (strain K96243) OX=272560 GN=irlR PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004590 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00072 all species → | Response_reg | Response regulator receiver domain | Domain | Interproscan |
| PF00486 all species → | Trans_reg_C | Transcriptional regulatory protein, C terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR001867 all species → | Domain | OmpR/PhoB-type DNA-binding domain | Interproscan |
| IPR001789 all species → | Domain | Signal transduction response regulator, receiver domain | Interproscan |
| IPR039420 all species → | Family | Transcriptional regulatory protein WalR-like | Interproscan |
| IPR006291 all species → | Family | Transcriptional regulatory protein CusR-like, heavy metal response | Interproscan |
| IPR011006 all species → | Homologous_superfamily | CheY-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48111 all species → | REGULATOR OF RPOS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000160 all species → | Biological Process | phosphorelay signal transduction system | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0000156 all species → | Molecular Function | phosphorelay response regulator activity | Interproscan |
| GO:0000976 all species → | Molecular Function | transcription cis-regulatory region binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0032993 all species → | Cellular Component | protein-DNA complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07665 | cusR, copR, silR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR | - | Antimicrobial resistance genes | ko01504 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
